Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A03
         (485 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0971 - 21949721-21949936,21950051-21950484,21950599-219507...    33   0.092
12_01_0275 - 2009525-2010097,2010274-2010308,2010932-2011076           28   3.5  
05_05_0079 + 22239238-22239395,22240837-22240877,22240955-222410...    28   3.5  

>10_08_0971 -
           21949721-21949936,21950051-21950484,21950599-21950791,
           21950909-21951007,21951114-21951191,21951275-21951669,
           21954317-21954482,21954840-21954927,21955015-21955127,
           21955242-21955426,21955840-21955987,21956071-21956349,
           21956425-21956529,21956892-21957137,21957367-21957408,
           21957539-21957613
          Length = 953

 Score = 33.5 bits (73), Expect = 0.092
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 96  SVMQASTKVDAKGHG-VTWLSCAIRPARVRPESHAARTASGDINI 227
           S++ A  KV + GHG V WL C++ P  V    + AR   G I I
Sbjct: 805 SIVLAIVKVHSLGHGAVLWLGCSVAPPGVWLRWYLARLNGGGIGI 849


>12_01_0275 - 2009525-2010097,2010274-2010308,2010932-2011076
          Length = 250

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 293 HIVVEAPNSSSLTIYK*ITFCFHFSCFMGTRLDTLIPQFLLASYYRYQD*VFGIV 457
           H  +EA + SS ++YK     F F+C  G     L+ + +    +     V GIV
Sbjct: 126 HRSLEAASDSSESVYKGSEDYFTFACRYGDTSPNLVSRLITGPVFNLNGQVLGIV 180


>05_05_0079 +
           22239238-22239395,22240837-22240877,22240955-22241033,
           22241570-22241656,22241749-22241837,22241933-22242004,
           22242094-22242186,22242339-22242427
          Length = 235

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = -2

Query: 280 YYHLLIFFIQLMVDSLGI-MLMSPLAVLAAWLSGRTLAGL 164
           YY+   +FI +M   LGI  +  P+A+LAA+++G ++A L
Sbjct: 52  YYYRTNYFILIMF-ILGIGFIWKPVAILAAFMTGISIAFL 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,940,572
Number of Sequences: 37544
Number of extensions: 228508
Number of successful extensions: 546
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)