Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A03
         (485 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57883| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-10)                 29   1.5  
SB_45990| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-32)                 27   6.2  
SB_2967| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.2  
SB_37223| Best HMM Match : ZZ (HMM E-Value=7.5)                        27   8.2  
SB_5138| Best HMM Match : Herpes_UL3 (HMM E-Value=2.3)                 27   8.2  

>SB_57883| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-10)
          Length = 325

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 235 LGIMLMSPLAVLAAWLSGRTLAGLMAQDNHVTPWPLASTFVLACMTLV 92
           +G  L   L V+  W++   +AG+ +   H  PW +  TF  +C+  V
Sbjct: 227 IGAFLACLLPVMFIWIA--YIAGVTSLKRHAFPWAVTLTFFNSCLNPV 272


>SB_45990| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-32)
          Length = 325

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 96  WYLFFIELFTNVFIFRSLILLCYTNRFATGR 4
           W+   + + TNV +   +I+LCYT+ + T R
Sbjct: 174 WWSIMV-IVTNVVVPFVIIMLCYTDMYCTAR 203


>SB_2967| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 319 QFLDYLQIDHILLSFFMFHG-YSTRHINTAIFVGFVL 426
           QF+D + IDH L+ F    G  S+R   TA+ + F L
Sbjct: 8   QFIDVIGIDHFLIEFLQPGGSTSSRAAATAVELQFAL 44


>SB_37223| Best HMM Match : ZZ (HMM E-Value=7.5)
          Length = 202

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 66 NVFIFRSLILLCYTNRFATGR 4
          N+F+ R L+LL YTN +  GR
Sbjct: 28 NLFLNRPLMLLLYTNTYKKGR 48


>SB_5138| Best HMM Match : Herpes_UL3 (HMM E-Value=2.3)
          Length = 567

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 132 GHGVTWLSCAIRPARVRPESHAARTASGDINIIPRLSTI 248
           G GVT+ SC + P+ +   S    T+  D  ++  LS +
Sbjct: 337 GAGVTYFSCPLEPSLLLGNSEEPLTSPKDATVLVSLSHV 375


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,219,745
Number of Sequences: 59808
Number of extensions: 272779
Number of successful extensions: 475
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)