Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A03
         (485 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81478-1|CAB03932.1|  199|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AC024759-6|AAP13761.1|  527|Caenorhabditis elegans Hypothetical ...    28   4.1  
U80030-6|AAG24164.1|  367|Caenorhabditis elegans Serpentine rece...    27   5.5  
Z82262-4|CAE17770.1|  679|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z81478-1|CAB03932.1|  199|Caenorhabditis elegans Hypothetical
           protein C31G12.1 protein.
          Length = 199

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 226 MLMSPLAVLAAWLSGRTLAGLMAQDNHVTPWPLASTFVLAC 104
           +LM+ +AV  AW S     G ++  N+ T W L S  ++AC
Sbjct: 51  LLMNTVAVTIAWFS----FGWISTKNYFTVWRLNSLSLVAC 87


>AC024759-6|AAP13761.1|  527|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.5 protein.
          Length = 527

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 283 QLLTYSS*GAKFQFLDYLQIDHILLSFFMF 372
           Q+  ++S G +F FL Y  +D ++++ F+F
Sbjct: 470 QMPRWTSAGKEFSFLKYFNLDLVIIAVFIF 499


>U80030-6|AAG24164.1|  367|Caenorhabditis elegans Serpentine
           receptor, class w protein119 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/62 (19%), Positives = 31/62 (50%)
 Frame = -2

Query: 280 YYHLLIFFIQLMVDSLGIMLMSPLAVLAAWLSGRTLAGLMAQDNHVTPWPLASTFVLACM 101
           Y+ L   F+  ++  L + +++ L ++  W + +  A + +  NH      + T ++ C+
Sbjct: 219 YFSLFNSFVSDIIPCLLLPIVTLLLIMNLWKTAKKRANITSATNHKNNNSTSKTGLVFCV 278

Query: 100 TL 95
           T+
Sbjct: 279 TI 280


>Z82262-4|CAE17770.1|  679|Caenorhabditis elegans Hypothetical
           protein C43F9.9 protein.
          Length = 679

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 230 YNVNVTTGCSCCMAFRTYP 174
           Y V V++ CSC M+F  YP
Sbjct: 434 YTVRVSSVCSCFMSFCLYP 452


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,756,693
Number of Sequences: 27780
Number of extensions: 218831
Number of successful extensions: 484
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)