Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A02
         (220 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.4  
SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)                       26   5.6  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -2

Query: 156 DDDMGFGLFD 127
           DDDMGFGLFD
Sbjct: 753 DDDMGFGLFD 762


>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = -2

Query: 156 DDDMGFGLFD 127
           DDDMGFGLFD
Sbjct: 101 DDDMGFGLFD 110


>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2639

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 52  IKLNPYK*CFTKAEMEY 102
           IKLNP K  F K+E+EY
Sbjct: 847 IKLNPKKCTFAKSEVEY 863


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,857,297
Number of Sequences: 59808
Number of extensions: 37759
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 16,821,457
effective HSP length: 50
effective length of database: 13,831,057
effective search space used: 304283254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)