Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A02
         (220 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02050.1 68416.m00168 potassium transporter (KUP3) nearly ide...    27   1.7  
At4g33690.1 68417.m04785 expressed protein                             25   6.8  
At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR ...    25   6.8  
At5g14880.1 68418.m01745 potassium transporter, putative similar...    25   9.0  
At2g24250.1 68415.m02896 F-box family protein contains Pfam:PF00...    25   9.0  

>At3g02050.1 68416.m00168 potassium transporter (KUP3) nearly
           identical to potassium transporter KUP3p [Arabidopsis
           thaliana] gi|6742169|gb|AAF19432; similar to tiny root
           hair 1 protein [Arabidopsis thaliana]
           gi|11181958|emb|CAC16137; KUP/HAK/KT Transporter family
           member, PMID:11500563
          Length = 789

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 3   ASFGVFEIIFYQLTFFNKVKSL*VMLYKS*NG 98
           A FG F +IF+ LT    +K L V+L    NG
Sbjct: 64  AVFGAFSLIFWTLTLIPLLKYLLVLLSADDNG 95


>At4g33690.1 68417.m04785 expressed protein 
          Length = 281

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 156 DDDMGFGLFD*KLYFKARIFHFS 88
           DDD G G  + K + ++R FH++
Sbjct: 134 DDDEGLGDVEVKTFLQSRYFHYT 156


>At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 894

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 124 KALF*SKNIPFQLL*SITYKDLTLLKKVNW 35
           KA+  S  IPFQ L S+   +L +L+ + W
Sbjct: 789 KAMTMSGIIPFQKLESLRLHNLAMLRSIYW 818


>At5g14880.1 68418.m01745 potassium transporter, putative similar to
           potassium transporter HAK2p [Mesembryanthemum
           crystallinum] gi|14091471|gb|AAK53759; KUP/HAK/KT
           Transporter family member, PMID:11500563; contains Pfam
           profile PF02705: K+ potassium transporter
          Length = 781

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 9   FGVFEIIFYQLTFFNKVKSL*VMLYKS*NG 98
           FGV  +IF+ LT    VK + ++L    NG
Sbjct: 61  FGVLSLIFWTLTLIPLVKYVFIVLRADDNG 90


>At2g24250.1 68415.m02896 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 374

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 146 WASVFLTKSFILKQEYSISAF 84
           W S F   S +L+Q YS+ AF
Sbjct: 48  WRSTFPFPSSLLRQSYSLPAF 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,568
Number of Sequences: 28952
Number of extensions: 29699
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 12,070,560
effective HSP length: 52
effective length of database: 10,565,056
effective search space used: 211301120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)