Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_A01
(350 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440... 29 1.4
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688... 29 1.4
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 28 1.8
07_01_0476 - 3593555-3594253,3594684-3594850,3594866-3594964,359... 28 2.4
03_02_0798 - 11321590-11321685,11321802-11321888,11321972-113220... 28 2.4
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485... 27 3.1
02_04_0256 + 21331396-21332268 27 4.1
06_03_1025 - 26980631-26981286,26981434-26981557,26982290-269824... 27 5.5
11_04_0090 - 13391028-13391117,13391369-13391502,13391532-133916... 26 7.2
09_02_0473 - 9690050-9690802,9690891-9691423,9692202-9692776,969... 26 7.2
08_02_1583 + 28036125-28037030,28037411-28037656 26 7.2
08_01_0759 - 7199085-7199414 26 7.2
08_01_0755 - 7159471-7160124 26 7.2
03_01_0178 + 1437263-1438017,1438754-1438858,1438950-1439072,143... 26 9.6
02_05_0432 + 28936293-28936796,28937382-28939250 26 9.6
02_01_0669 + 4974567-4974610,4975142-4975211,4975355-4975429 26 9.6
>08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,
44090-44322,45308-45412,45531-45705,46443-46658
Length = 977
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 16 LVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTSGAMVKV 177
L G+ SR V P + ++ Y D+ EQW R R + L ++ + + G+ +V
Sbjct: 886 LTGLGSRIV---SPVFGLQSYSDKGEQWFQLR-RPDSKQLQIDGESSKGSRAEV 935
>01_06_0996 +
33667663-33667900,33668019-33668091,33668785-33668841,
33668970-33669067,33669482-33669637,33669744-33670366,
33670484-33670560,33671551-33671805,33671950-33672067,
33672174-33672345,33672434-33672975
Length = 802
Score = 28.7 bits (61), Expect = 1.4
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 14 FWSASTA-GTCSLKSLVTTLNNMRISRSSGPT 106
FW ST CS L+ LNN +SR +GP+
Sbjct: 40 FWPRSTKWALCSEVDLIGPLNNWTLSRLTGPS 71
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 121 AGAPWSWPTAPADPHIVQCSNQALQRARTG 32
AG PW+W +PA + +C A +R TG
Sbjct: 408 AGGPWTWRESPASRAMQKC--PACKRTHTG 435
>07_01_0476 -
3593555-3594253,3594684-3594850,3594866-3594964,
3595620-3595806,3595880-3595948,3596551-3596752,
3597124-3597362,3598374-3598637
Length = 641
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 105 LQGAPASGCTNCQLRRHLRCYGQGTYN 185
L G P G N + +LRCYG +Y+
Sbjct: 302 LNGVPGCGFLNHAINLYLRCYGSLSYH 328
>03_02_0798 -
11321590-11321685,11321802-11321888,11321972-11322082,
11322169-11322515,11322570-11322612,11322669-11322749,
11323321-11323596,11325277-11325552
Length = 438
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 127 PLAGAPWSWPTAPADPHIVQCSNQALQR 44
PL+GAP P AP P + C AL +
Sbjct: 15 PLSGAPRRRPAAPTRPSALVCGTYALTK 42
>07_01_0646 +
4853546-4853623,4853732-4855357,4855467-4855751,
4856131-4856277
Length = 711
Score = 27.5 bits (58), Expect = 3.1
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +1
Query: 124 AGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 297
AG + + G V + G +NH +S +G GA TAG AY+ +N G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226
>02_04_0256 + 21331396-21332268
Length = 290
Score = 27.1 bits (57), Expect = 4.1
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -3
Query: 126 RLPAHPGVGPLLRLILILFNVVTRLFNEHVPAVDADQK 13
RL AHPG P +RLIL+ + + LF A AD K
Sbjct: 143 RLLAHPGRLPPVRLILV--DSIASLFRADFDASPADLK 178
>06_03_1025 -
26980631-26981286,26981434-26981557,26982290-26982426,
26983220-26983355,26983615-26983922,26985159-26985207
Length = 469
Score = 26.6 bits (56), Expect = 5.5
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +1
Query: 127 GALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 297
G SD + A V P E+ ++ G+V++ +L AAT D + G G
Sbjct: 23 GLRKCKSDSKATASVLAPPKDVEDLQIEGYGNVNIFTYNELRAATKNFRPDQILGEG 79
>11_04_0090 -
13391028-13391117,13391369-13391502,13391532-13391659,
13391684-13391718,13391719-13392159
Length = 275
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 100 PTAPADPHIVQCSNQALQRARTG 32
PTAP H + CS RA TG
Sbjct: 44 PTAPPKHHSLSCSGSQAPRATTG 66
>09_02_0473 -
9690050-9690802,9690891-9691423,9692202-9692776,
9693476-9693507
Length = 630
Score = 26.2 bits (55), Expect = 7.2
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +1
Query: 52 EPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTSGAMVKVP-ITGNENHRLSA-LGSV 225
+P +++ + E + VR++ G + +VP I G L+ LG
Sbjct: 109 KPNEILKKTSGRSETPLHEAVRQRCERKIEELKGKDSGLARVPDINGMSPLYLAIPLGYR 168
Query: 226 DLTNQMKLGAATAGLAYDNVNG 291
D+ +++ L A L+YD NG
Sbjct: 169 DIVDKLTLTFGDANLSYDGPNG 190
>08_02_1583 + 28036125-28037030,28037411-28037656
Length = 383
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 127 PLAGAPWSWPTAPAD 83
PLA SWPT+PAD
Sbjct: 179 PLAAVVESWPTSPAD 193
>08_01_0759 - 7199085-7199414
Length = 109
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 136 LVHPLAGAPWSWPTAPADPHIVQCSNQALQRARTG 32
+V P A AP P+A A + C + ALQ R G
Sbjct: 31 VVLPPAAAPGEAPSADAAAFVRSCCDTALQADRDG 65
>08_01_0755 - 7159471-7160124
Length = 217
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 136 LVHPLAGAPWSWPTAPADPHIVQCSNQALQRARTG 32
+V P A AP P+A A + C + ALQ R G
Sbjct: 31 VVLPPAAAPGEAPSADAAAFVRSCCDTALQADRDG 65
>03_01_0178 +
1437263-1438017,1438754-1438858,1438950-1439072,
1439908-1440078,1440163-1440292,1440372-1440581,
1440675-1440773
Length = 530
Score = 25.8 bits (54), Expect = 9.6
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 130 ALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 297
A T GA + +G+ +S LG +L AT GLA +NV G G
Sbjct: 172 ATTSGGSERDGATPRSTASGSAGPEVSHLGWGHWFTLRELEEATDGLAEENVIGEG 227
>02_05_0432 + 28936293-28936796,28937382-28939250
Length = 790
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 46 VEEPGYYIEQYEDQPEQWANSRV 114
V P + + E+ PEQW SR+
Sbjct: 97 VRSPELVVPELEELPEQWRRSRI 119
>02_01_0669 + 4974567-4974610,4975142-4975211,4975355-4975429
Length = 62
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 84 SAGAVGQLQGAPASGCTNCQLRRHL 158
++ ++GQ Q A A+G T C +RR++
Sbjct: 13 TSSSMGQGQQASANGVTACNIRRNI 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.130 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,916,205
Number of Sequences: 37544
Number of extensions: 194585
Number of successful extensions: 390
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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