Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_A01
(350 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_58205| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21) 27 3.2
SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23) 27 4.3
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011) 27 4.3
SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_50529| Best HMM Match : 7TMR-HDED (HMM E-Value=2.3) 27 5.7
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_11307| Best HMM Match : Pam16 (HMM E-Value=5.4) 27 5.7
SB_6377| Best HMM Match : Exo_endo_phos (HMM E-Value=6.5e-10) 26 7.5
SB_30754| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
SB_21746| Best HMM Match : PHD (HMM E-Value=0.066) 26 9.9
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039) 26 9.9
SB_9777| Best HMM Match : PHD (HMM E-Value=0.066) 26 9.9
SB_2883| Best HMM Match : Exo_endo_phos (HMM E-Value=2.1e-09) 26 9.9
>SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 28.7 bits (61), Expect = 1.4
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +2
Query: 20 SASTAGTCSLKSLVTTLNNMRISRSSGPTPGCAGKRVH*LSTQTAPQVLWSRYL*LETKI 199
SA+TA S+ + TL +S ++GPTP + ++ L+ + + L + + +
Sbjct: 113 SATTAQDSSVLDTLATLATATLSHNTGPTPSTSMQQATSLAGRISVTPLTLSQNTISSSL 172
Query: 200 TG-SVPLAP 223
+G S PL P
Sbjct: 173 SGLSTPLTP 181
>SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 38 TCSLKSLVTTLNNMRISRSSGPTPGC 115
T + K+++TTL MRI ++GP C
Sbjct: 654 TTTKKTIITTLTTMRICAANGPLIDC 679
>SB_58205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +3
Query: 111 GAPASGCTNCQLRRHLRCYGQGTYNWKRKS 200
G PA N QL R RC TY W RKS
Sbjct: 73 GKPAYFAKNLQLDRK-RCLYPKTYTWDRKS 101
>SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
Length = 1336
Score = 27.5 bits (58), Expect = 3.2
Identities = 22/87 (25%), Positives = 37/87 (42%)
Frame = +1
Query: 31 SRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLS 210
+R + EP ++ EDQ E A+S +R +AG +D G + + T N NH
Sbjct: 1183 ARKAQINEPPSPLKVQEDQRETEAHSPIRTRAGREATCNDHLKGCVNQA--TCN-NHLKG 1239
Query: 211 ALGSVDLTNQMKLGAATAGLAYDNVNG 291
+ + +K G D++ G
Sbjct: 1240 CVNQATCNDHLK-GCVNQATCNDHLKG 1265
>SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)
Length = 1592
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 132 TNCQLRRHL-RCYGQGTYNWKRKSQAQCPWLRRS 230
TN Q L R Y YNW+ + + PWL ++
Sbjct: 1207 TNIQTNVSLVRKYNSWEYNWRNSLEKRMPWLGKT 1240
>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
Length = 1745
Score = 27.1 bits (57), Expect = 4.3
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +2
Query: 2 SYQFFWSASTAGTCSLKSLVTTLNNMRISRSSGPTPGCAGKRVH*LSTQTAPQVLWSRYL 181
S+ FW +S+ + S S+ +L+++R S G + LS T P W+R++
Sbjct: 376 SHSGFWFSSSRFSRSSSSISDSLSSLRSRASWRRLTDVLGSSMVSLSVATTPCSSWARFV 435
>SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 472
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 43 LVEEPGYYIEQYEDQPEQW 99
L EEPGYYIE + PE W
Sbjct: 210 LDEEPGYYIE--KKAPESW 226
>SB_50529| Best HMM Match : 7TMR-HDED (HMM E-Value=2.3)
Length = 697
Score = 26.6 bits (56), Expect = 5.7
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 14 FWSASTAGTCSLKSLVTTLNNMRISRSSGPTPGCAGKRVH*LSTQTAPQVLWSRYL 181
FW +S+ + S S+ +L+++R S G + LS T P W+RY+
Sbjct: 262 FWFSSSRFSRSSSSISDSLSSLRSRASWRRLSDVLGSSMVSLSGATTPCSSWTRYV 317
>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1778
Score = 26.6 bits (56), Expect = 5.7
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +1
Query: 79 EDQPEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAA 258
+++P V+ + T+N + +K + GN + L A S N K G
Sbjct: 651 DNEPVTETIDSVKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDK 707
Query: 259 TAGLAY-DNVNGHGATLT-KTHIPGFGDK 339
++Y DN+N A T + IPG K
Sbjct: 708 DVVISYSDNMNNSKAANTDQFGIPGSDSK 736
>SB_11307| Best HMM Match : Pam16 (HMM E-Value=5.4)
Length = 405
Score = 26.6 bits (56), Expect = 5.7
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 14 FWSASTAGTCSLKSLVTTLNNMRISRSSGPTPGCAGKRVH*LSTQTAPQVLWSRYL 181
FW +S+ + S S+ +L+++R S G + LS T P W+RY+
Sbjct: 69 FWFSSSRFSRSSSSISDSLSSLRSRASWRRLSDVLGSSMVSLSGATTPCSSWTRYV 124
>SB_6377| Best HMM Match : Exo_endo_phos (HMM E-Value=6.5e-10)
Length = 450
Score = 26.2 bits (55), Expect = 7.5
Identities = 8/31 (25%), Positives = 14/31 (45%)
Frame = +3
Query: 129 CTNCQLRRHLRCYGQGTYNWKRKSQAQCPWL 221
C C + H+RC T + + + C W+
Sbjct: 116 CDFCDIWSHIRCLNMNTIIYDALANSSCVWV 146
>SB_30754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 117 PASGCTNCQLRRHLRCYGQGTY 182
P +G TNC ++ H+R Y TY
Sbjct: 50 PYTGHTNCIIKSHIRPYTGHTY 71
>SB_21746| Best HMM Match : PHD (HMM E-Value=0.066)
Length = 203
Score = 25.8 bits (54), Expect = 9.9
Identities = 8/30 (26%), Positives = 13/30 (43%)
Frame = +3
Query: 129 CTNCQLRRHLRCYGQGTYNWKRKSQAQCPW 218
C C + H+RC T + + + C W
Sbjct: 116 CDFCDIWSHIRCLNMNTIIYDALANSSCVW 145
>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
Length = 685
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 239 WLVRSTEPRALSL*FSFPVIGTLTIAPEVP 150
W+V ++EP LS +I T +I P P
Sbjct: 472 WVVETSEPLQLSTTIMISIITTTSILPSFP 501
>SB_9777| Best HMM Match : PHD (HMM E-Value=0.066)
Length = 203
Score = 25.8 bits (54), Expect = 9.9
Identities = 8/30 (26%), Positives = 13/30 (43%)
Frame = +3
Query: 129 CTNCQLRRHLRCYGQGTYNWKRKSQAQCPW 218
C C + H+RC T + + + C W
Sbjct: 116 CDFCDIWSHIRCLNMNTIIYDALANSSCVW 145
>SB_2883| Best HMM Match : Exo_endo_phos (HMM E-Value=2.1e-09)
Length = 598
Score = 25.8 bits (54), Expect = 9.9
Identities = 8/30 (26%), Positives = 13/30 (43%)
Frame = +3
Query: 129 CTNCQLRRHLRCYGQGTYNWKRKSQAQCPW 218
C C + H+RC T + + + C W
Sbjct: 113 CDFCDIWSHIRCLNMNTIIYDALANSSCVW 142
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.313 0.130 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,317,606
Number of Sequences: 59808
Number of extensions: 215039
Number of successful extensions: 455
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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