Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A01
         (350 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22300.1 68417.m03225 phospholipase/carboxylesterase family p...    27   2.7  
At5g43990.2 68418.m05382 SET domain-containing protein identical...    27   4.6  
At5g43990.1 68418.m05383 SET domain-containing protein identical...    27   4.6  
At5g09410.1 68418.m01090 calmodulin-binding protein similar to a...    27   4.6  
At5g65160.1 68418.m08195 tetratricopeptide repeat (TPR)-containi...    26   6.1  
At1g05830.1 68414.m00610 trithorax protein, putative / PHD finge...    26   6.1  
At5g55530.3 68418.m06918 C2 domain-containing protein low simila...    26   8.1  
At5g55530.2 68418.m06917 C2 domain-containing protein low simila...    26   8.1  
At5g55530.1 68418.m06916 C2 domain-containing protein low simila...    26   8.1  
At5g39910.1 68418.m04840 glycoside hydrolase family 28 protein /...    26   8.1  

>At4g22300.1 68417.m03225 phospholipase/carboxylesterase family
           protein similar to acyl-protein thioesterase-1 [Homo
           sapiens] GI:9965372; contains Pfam profile PF02230:
           Phospholipase/Carboxylesterase family
          Length = 471

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 124 LAGAPWSWPTAPADPHIVQCSNQALQRA 41
           L+ A W +P+AP +P  V C+N A+ R+
Sbjct: 31  LSNASWLFPSAPFNP--VTCNNGAVMRS 56


>At5g43990.2 68418.m05382 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 740

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +1

Query: 100 ANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYD 279
           +N  V  +AG     +DGT+  +    +    +H+L+A  +++    ++L ++ +G    
Sbjct: 219 SNGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAA--TIEEPPALELASSASGEVKI 276

Query: 280 NVNGHGAT-LTKTHIP 324
           N++   AT  +  H+P
Sbjct: 277 NLSFAPATGGSNPHLP 292


>At5g43990.1 68418.m05383 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 717

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +1

Query: 100 ANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYD 279
           +N  V  +AG     +DGT+  +    +    +H+L+A  +++    ++L ++ +G    
Sbjct: 196 SNGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAA--TIEEPPALELASSASGEVKI 253

Query: 280 NVNGHGAT-LTKTHIP 324
           N++   AT  +  H+P
Sbjct: 254 NLSFAPATGGSNPHLP 269


>At5g09410.1 68418.m01090 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from [Nicotiana tabacum]
          Length = 1007

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 117 PASGCTNCQLRRHLRCYGQGTYNWKRKSQAQCPWLRRSH*PNEVGS 254
           PASG      R+ LR + +  +NW++K   +   +R +H   +VGS
Sbjct: 55  PASGSLFLFDRKVLRYFRKDGHNWRKKKDGKT--IREAHEKLKVGS 98


>At5g65160.1 68418.m08195 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 593

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 226 DLTNQMKLGAATAGLAYDNVNGHGATLT 309
           +L N  + G  TAG+ Y N NG+G   T
Sbjct: 180 NLGNLNQTGPVTAGVNYGNNNGYGVKRT 207


>At1g05830.1 68414.m00610 trithorax protein, putative / PHD finger
           family protein / SET domain-containing protein similar
           to trithorax-like protein 1 [Arabidopsis thaliana]
           GI:12659210; contains Pfam domain, PF00628: PHD-finger
           and PF00856: SET domain
          Length = 1056

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 129 CTNCQLRRHLRCYGQ 173
           C  C++  H RCYGQ
Sbjct: 611 CDKCRMMVHTRCYGQ 625


>At5g55530.3 68418.m06918 C2 domain-containing protein low
           similarity to cold-regulated gene SRC2 [Glycine max]
           GI:2055230; contains Pfam profile PF00168: C2 domain
          Length = 405

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +1

Query: 136 TVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKT 315
           T++S+ TS ++V    +  ENH  +++ S+   +  +   AT G A  + + H AT T  
Sbjct: 242 TIDSE-TSDSLVT---SDAENHVTNSVTSILKQDSPESSNATNGAASPHASAHSATETPN 297

Query: 316 H 318
           H
Sbjct: 298 H 298


>At5g55530.2 68418.m06917 C2 domain-containing protein low
           similarity to cold-regulated gene SRC2 [Glycine max]
           GI:2055230; contains Pfam profile PF00168: C2 domain
          Length = 405

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +1

Query: 136 TVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKT 315
           T++S+ TS ++V    +  ENH  +++ S+   +  +   AT G A  + + H AT T  
Sbjct: 242 TIDSE-TSDSLVT---SDAENHVTNSVTSILKQDSPESSNATNGAASPHASAHSATETPN 297

Query: 316 H 318
           H
Sbjct: 298 H 298


>At5g55530.1 68418.m06916 C2 domain-containing protein low
           similarity to cold-regulated gene SRC2 [Glycine max]
           GI:2055230; contains Pfam profile PF00168: C2 domain
          Length = 405

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +1

Query: 136 TVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKT 315
           T++S+ TS ++V    +  ENH  +++ S+   +  +   AT G A  + + H AT T  
Sbjct: 242 TIDSE-TSDSLVT---SDAENHVTNSVTSILKQDSPESSNATNGAASPHASAHSATETPN 297

Query: 316 H 318
           H
Sbjct: 298 H 298


>At5g39910.1 68418.m04840 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase PG1 [Glycine max] GI:5669846; contains
           PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 373

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 167 IAPEVPSELTVSAPACRRTLELAHCSG 87
           IAPE P E   +   C + +E AH +G
Sbjct: 105 IAPESPYEWKCNKDDCHQWIEFAHING 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.130    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,690,321
Number of Sequences: 28952
Number of extensions: 142330
Number of successful extensions: 296
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)