Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_O24
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0095 - 991086-991487,992745-992903                               30   2.1  
11_06_0344 + 22540436-22540737,22541304-22543545                       28   8.6  

>04_01_0095 - 991086-991487,992745-992903
          Length = 186

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 71  SHTPWSTGCSKGLGRSMLWPGPYI 142
           S TPW +  + G G+S+ WP P +
Sbjct: 20  SSTPWPSAVATGFGQSLGWPDPRV 43


>11_06_0344 + 22540436-22540737,22541304-22543545
          Length = 847

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
 Frame = +2

Query: 65  ERSHTPW----STGCSKGLGRSMLWPGPYIYDRGPQR 163
           ER  +PW       CS GLGR  + P P     GP R
Sbjct: 38  ERPRSPWLPSEPVNCSGGLGRPWMTPEPLGGSEGPGR 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,337,777
Number of Sequences: 37544
Number of extensions: 390323
Number of successful extensions: 686
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)