Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_O23
(824 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 200 2e-52
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 158 8e-40
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 144 1e-35
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 136 3e-33
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 136 5e-33
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 114 1e-26
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 97 2e-21
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 91 2e-19
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 83 4e-17
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 83 5e-17
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 76 7e-15
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 74 3e-14
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 73 7e-14
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 69 6e-13
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 65 1e-11
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 65 1e-11
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 43 5e-05
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 43 5e-05
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 41 2e-04
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 40 6e-04
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 28 1.4
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.4
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 26 5.6
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 200 bits (488), Expect = 2e-52
Identities = 102/146 (69%), Positives = 116/146 (79%), Gaps = 1/146 (0%)
Frame = -3
Query: 594 FRLAKENSPXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMA 415
FR+A+EN+P ATKRFDAQTGADREVQRIL+ELL QMDGFDQ NVKVIMA
Sbjct: 220 FRMARENAPAIIFIDEIDAIATKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVIMA 279
Query: 414 TNRADTLDPALLRPGRLDRKIEFP-LPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDR 238
TNRADTLDPALLRPGRLDRKIEFP DRRQ+RL+F TIT KM LS EVDL+ F+ RPD
Sbjct: 280 TNRADTLDPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDA 339
Query: 237 VSGADINAICQEAGMHAVRENRYIVL 160
SGA I AI Q+AG+ AVR++R ++L
Sbjct: 340 SSGAQIAAIMQDAGLLAVRKSRGVIL 365
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 158 bits (384), Expect = 8e-40
Identities = 81/156 (51%), Positives = 108/156 (69%), Gaps = 1/156 (0%)
Frame = -3
Query: 594 FRLAKENSPXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQTT-NVKVIM 418
F A+E+SP TKR+DAQ+GA+RE+QR +LELLNQ+DGFD + ++KVIM
Sbjct: 277 FNAAEEHSPSIVFIDEIDAIGTKRYDAQSGAEREIQRTMLELLNQLDGFDTSQRDIKVIM 336
Query: 417 ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDR 238
ATNR LDPAL+RPGR+DRKI F PD KR IF+ T+KMNL ++V+LEE + D
Sbjct: 337 ATNRISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDD 396
Query: 237 VSGADINAICQEAGMHAVRENRYIVLX*RFRKGLQE 130
+SGA+I AI EAG+ A+RE R V+ FR+ ++
Sbjct: 397 LSGAEIKAIVSEAGLLALRERRMRVVMDDFRQAREK 432
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 144 bits (349), Expect = 1e-35
Identities = 74/155 (47%), Positives = 94/155 (60%)
Frame = -3
Query: 594 FRLAKENSPXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMA 415
F LAKE SP TKRFD++ DREVQR +LELLNQ+DGF VKVI A
Sbjct: 271 FALAKEKSPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAA 330
Query: 414 TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRV 235
TNR DTLDPALLR GRLDRK+EFPLP+ + I + KM + D+++ EE D
Sbjct: 331 TNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELARSTDEY 390
Query: 234 SGADINAICQEAGMHAVRENRYIVLX*RFRKGLQE 130
+GA + ++C EAGM A+R+ + F G+ E
Sbjct: 391 NGAMLKSVCVEAGMIALRQGDTKINHEHFMDGILE 425
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 136 bits (330), Expect = 3e-33
Identities = 68/142 (47%), Positives = 91/142 (64%), Gaps = 1/142 (0%)
Frame = -3
Query: 594 FRLAKENSPXXXXXXXXXXXATKRFDAQTGA-DREVQRILLELLNQMDGFDQTTNVKVIM 418
F +A+E++P + R D+ G+ D EVQR +LELLNQ+DGF+ T N+KVIM
Sbjct: 231 FVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGFEATKNIKVIM 290
Query: 417 ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDR 238
ATNR D LDPALLRPGR+DRKIEFP P + I + MNL+ +DL+ + +
Sbjct: 291 ATNRIDILDPALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNG 350
Query: 237 VSGADINAICQEAGMHAVRENR 172
SGA++ +C EAGM A+RE R
Sbjct: 351 ASGAELKGVCTEAGMFALRERR 372
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 136 bits (328), Expect = 5e-33
Identities = 70/145 (48%), Positives = 88/145 (60%), Gaps = 1/145 (0%)
Frame = -3
Query: 594 FRLAKENSPXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMA 415
F AKE+ P +RF T ADRE+QR L+ELLNQMDGFD K+IMA
Sbjct: 218 FGYAKEHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDYLGQTKIIMA 277
Query: 414 TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRV 235
TNR DTLDPALLRPGRLDRKIE PLP+ + I K++ E+D E V D
Sbjct: 278 TNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGT 337
Query: 234 SGADINAICQEAGMHAVRENR-YIV 163
+GAD+ + EAG A++E+R Y++
Sbjct: 338 NGADLRNVVTEAGFIAIKEDRDYVI 362
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 114 bits (275), Expect = 1e-26
Identities = 56/132 (42%), Positives = 78/132 (59%)
Frame = -3
Query: 525 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEF 346
RFD G D EVQR +LEL+ Q+DGFD N+KV+ ATNR +TLD AL+RPGR+DRK+EF
Sbjct: 288 RFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVLFATNRPNTLDEALMRPGRIDRKVEF 347
Query: 345 PLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAICQEAGMHAVRENRYI 166
LPD + I M + ++ E +GA++ ++C EAGM A+R R +
Sbjct: 348 GLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGMFAIRARRRV 407
Query: 165 VLX*RFRKGLQE 130
F +Q+
Sbjct: 408 ATEKDFLDAVQK 419
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 97.5 bits (232), Expect = 2e-21
Identities = 46/114 (40%), Positives = 70/114 (61%)
Frame = -3
Query: 516 AQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 337
A G D R++ LLN++DG + NV V+ ATNR D +DPAL+RPGRLDR + P
Sbjct: 655 ANRGEDNSSDRVVAALLNELDGIEALRNVLVLAATNRPDMIDPALMRPGRLDRLLYVGPP 714
Query: 336 DRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAICQEAGMHAVREN 175
+ ++ I KM +++VDL+ + + SGA++ A+CQEAG+ A+ E+
Sbjct: 715 NFEARKQIVKIQAEKMKFAEDVDLDLIAEKTEGCSGAEVVALCQEAGLIAMHED 768
Score = 69.7 bits (163), Expect = 5e-13
Identities = 36/103 (34%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Frame = -3
Query: 486 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFS 307
R + LL +DG V VI ATNR +++D AL RPGRL+++IE +PD+ + I
Sbjct: 398 RAVATLLTLLDGMANAGKVVVIAATNRPNSIDEALRRPGRLEKEIEIGIPDKSARLDIIK 457
Query: 306 TITTKM-NLSDEVDLEEFVARPDRVSGADINAICQEAGMHAVR 181
+ + + N ++ LE+ +R GAD+ A+ +EA + A++
Sbjct: 458 LLLSGVPNEINDAQLEDLASRTHAYVGADLAAVVREAALRAIK 500
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 91.1 bits (216), Expect = 2e-19
Identities = 52/139 (37%), Positives = 78/139 (56%)
Frame = -3
Query: 594 FRLAKENSPXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMA 415
F A++NSP A KR +T + E +R++ +LL MDG +NV V+ A
Sbjct: 310 FEEAEKNSPAIIFIDEIDSIAPKR--EKTNGEVE-RRVVSQLLTLMDGMKARSNVVVMAA 366
Query: 414 TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRV 235
TNR +++DPAL R GR DR+++ +PD + I T M L+D+VDLE+ A
Sbjct: 367 TNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAETHGY 426
Query: 234 SGADINAICQEAGMHAVRE 178
G+D+ ++C EA M +RE
Sbjct: 427 VGSDLASLCSEAAMQQIRE 445
Score = 82.6 bits (195), Expect = 6e-17
Identities = 44/114 (38%), Positives = 63/114 (55%)
Frame = -3
Query: 516 AQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 337
A G R++ +LL +MDG + NV VI ATNR D +DPAL+RPGRLD+ I PLP
Sbjct: 608 ASAGDSGGGDRVVNQLLTEMDGVNSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYVPLP 667
Query: 336 DRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGADINAICQEAGMHAVREN 175
D + I T ++++VDL SGAD+ + Q A A++++
Sbjct: 668 DEEARFSILQTQLRHTPVAEDVDLRAVAKATHGFSGADLEFVVQRAVKLAIKDS 721
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 83.4 bits (197), Expect = 4e-17
Identities = 51/141 (36%), Positives = 79/141 (56%), Gaps = 3/141 (2%)
Frame = -3
Query: 594 FRLAKENSPXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMA 415
F A+ +SP +R D+ + A R++ LL ++DG + V VI A
Sbjct: 578 FLRARASSPCVIFFDELDAMVPRRDDSLSEAS---SRVVNTLLTELDGLSDRSGVYVIAA 634
Query: 414 TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDR- 238
TNR D +DPA+LRPGRLD+ + LPD ++ I T+T + L +EV+L + + R +R
Sbjct: 635 TNRPDIIDPAMLRPGRLDKTLLVDLPDAHERVEILKTLTKQTPLHEEVNL-DVLGRDERC 693
Query: 237 --VSGADINAICQEAGMHAVR 181
SGAD+ A+ +EA + A+R
Sbjct: 694 SNFSGADLAALVREAAVTALR 714
Score = 65.7 bits (153), Expect = 8e-12
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 2/140 (1%)
Frame = -3
Query: 594 FRLAKENSPXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTN--VKVI 421
F AK +P KR AQ +R + L ++++ F++T V VI
Sbjct: 260 FEEAKSLAPCLMFIDEIDAVTPKRESAQREMERRIVAQFLTCMDELS-FEKTDGKPVLVI 318
Query: 420 MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPD 241
ATNR D+LD AL R GR DR+I +P + + I T+ + LS + D + +
Sbjct: 319 GATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAKGLKLSGDFDFRQLAKQTP 378
Query: 240 RVSGADINAICQEAGMHAVR 181
GAD+ A+ AG+ A++
Sbjct: 379 GYVGADLKALTAAAGIIAIK 398
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 83.0 bits (196), Expect = 5e-17
Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
Frame = -3
Query: 594 FRLAKENSPXXXXXXXXXXXATKRF-DAQTGADREVQRILLELLNQMDGFDQTTNVKVIM 418
F A++N+P R Q G++ E + L +LL +MDGF + ++ V
Sbjct: 381 FATARKNAPCIIFIDEIDAIGKARGRGGQFGSNDERESTLNQLLVEMDGFTSSEHIVVFA 440
Query: 417 ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDL--EEFVARP 244
TNR D LDPALLRPGR DR+I PD + IF + +D +DL +
Sbjct: 441 GTNRPDVLDPALLRPGRFDRQITIDRPDIGGREQIFKVHLKHIKAADNIDLIAKRLAVLT 500
Query: 243 DRVSGADINAICQEAGMHAVRENRYIVLX*RFRKGLQ 133
+GADI +C E + A R N V F + ++
Sbjct: 501 SGFTGADIMNVCNEGALIAARSNSNEVQMVHFEQAIE 537
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 75.8 bits (178), Expect = 7e-15
Identities = 44/113 (38%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
Frame = -3
Query: 510 TGADREV-QRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 334
+G D V +++ +LL +MDG DQ N+ VI TNR D +D ALLRPGRL+ +E LPD
Sbjct: 391 SGGDTGVGDQVVNQLLAKMDGVDQLNNILVIGMTNRKDMIDEALLRPGRLEVHMEISLPD 450
Query: 333 RRQKRLIFSTITTKMN----LSDEVDLEEFVARPDRVSGADINAICQEAGMHA 187
+ I T++M L ++VD+EE + SGA+I + + A A
Sbjct: 451 EHGRLQILKIHTSRMASNGILENDVDMEELASLTKNFSGAEIAGLIKSASSFA 503
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 73.7 bits (173), Expect = 3e-14
Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Frame = -3
Query: 483 ILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFST 304
I+ LL MDG + V +I ATNR D +DPAL RPGR DR+ FPLPDR ++ I
Sbjct: 391 IVSTLLALMDGMESRGQVIIIGATNRPDAVDPALRRPGRFDREFYFPLPDRDARKKIIEI 450
Query: 303 ITTKMNLSDEVDLEEFVARPDR-VSGADINAICQEAGMHAVR 181
T + L +A + GAD+ A+C EA +++++
Sbjct: 451 HTRNWDPPVPEWLCSMLAEKSKGYGGADLRALCTEAALNSIK 492
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 72.5 bits (170), Expect = 7e-14
Identities = 42/102 (41%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Frame = -3
Query: 483 ILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFST 304
I+ LL MDG D V VI ATNR + LDPAL RPGR DR+ FPLP+++ + I
Sbjct: 497 IVSTLLALMDGLDTRGQVVVIGATNRPNDLDPALRRPGRFDREFYFPLPNKQARMKILEI 556
Query: 303 ITTKMNLS-DEVDLEEFVARPDRVSGADINAICQEAGMHAVR 181
+ + E L GAD+ A+C EA ++AVR
Sbjct: 557 NSLHFSPKIPESYLLHLAESTSGYGGADLKALCTEAALNAVR 598
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 69.3 bits (162), Expect = 6e-13
Identities = 32/103 (31%), Positives = 60/103 (58%)
Frame = -3
Query: 486 RILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFS 307
R++ ++L QMDG + V ++ AT R D +DPALLRPGRLD+ I LP+ ++ +
Sbjct: 725 RVVNQILTQMDGAESLDGVYIVAATTRPDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQ 784
Query: 306 TITTKMNLSDEVDLEEFVARPDRVSGADINAICQEAGMHAVRE 178
+ + ++ + L++ D + AD++++ +A + AV +
Sbjct: 785 KLANRFHIENAAMLKKLSTLTDGYTYADLSSLLYDAHLIAVHK 827
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 65.3 bits (152), Expect = 1e-11
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
Frame = -3
Query: 594 FRLAKENSPXXXXXXXXXXXATKRFDAQTGADREVQRILLELLNQMDGFDQTTN----VK 427
F A++ +P KR +A+ A +++ L +LL +DGF + + V
Sbjct: 352 FAAARKQAPSIIFIDELDAIGQKR-NARDAA--HMRQTLNQLLVDLDGFSKNEDLAHPVV 408
Query: 426 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVAR 247
I ATN ++LDPAL RPGR DR I PLPD R + I T + L +VDL
Sbjct: 409 FIGATNFPESLDPALTRPGRFDRHIHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIARG 468
Query: 246 PDRVSGADINAICQEAGMHA 187
+GAD+ + +A ++A
Sbjct: 469 TSGFAGADLANLINQAAVYA 488
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 64.9 bits (151), Expect = 1e-11
Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Frame = -3
Query: 492 VQRILLELLNQMDGFDQTTN--VKVIMATNRADTLDPALLRPGRLDRKIEFPL-PDRRQK 322
+ R++ +LL ++D + N V VI ATNR D LDP+LLRPGR D+ + + K
Sbjct: 773 MDRVVSQLLAELDSISKDNNKYVFVIGATNRPDLLDPSLLRPGRFDKLVYLGINKSEESK 832
Query: 321 RLIFSTITTKMNLSDEVDLEEFVAR-PDRVSGADINAICQEAGMHAVR 181
+ +T L + +DL E +GAD+ A+C +A + A++
Sbjct: 833 ASMLRALTKTFKLDETIDLNEIAKNCHPNFTGADMYALCSDAVLSAIK 880
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 43.2 bits (97), Expect = 5e-05
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = -3
Query: 471 LLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFS 307
LLN +DG + + M TN + LDPAL+RPGR+D K Q R +F+
Sbjct: 327 LLNALDGVTSSDERIIFMTTNHPEKLDPALVRPGRVDVKAYLGNATPEQVREMFT 381
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 43.2 bits (97), Expect = 5e-05
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Frame = -3
Query: 486 RILLELLNQMDGF-DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIF 310
+I E ++ DG + V V+ ATNR +D A+ R R+ + PLP+ Q+R I
Sbjct: 210 QIKAEFMSMWDGLLSGQSRVLVLGATNRPADIDEAIRR--RMPKVFSIPLPNAEQRRKIL 267
Query: 309 STITTKMNLSDEVDLEEFVARPDRVSGADINAICQEA 199
K+ L D V +SG+ I +C+ A
Sbjct: 268 ELYLKKVPLEANFDWNGVVNATAGLSGSYIKEVCRSA 304
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 41.1 bits (92), Expect = 2e-04
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = -3
Query: 432 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITT--KMNLSDEVDLEE 259
V V+ ATN +D A R R R+ PLPD +RL + + K +LS E D+E
Sbjct: 606 VLVLAATNLPWCIDDAARR--RFVRRTYIPLPDETTRRLHLNNLLKYQKHSLSLE-DIEA 662
Query: 258 FVARPDRVSGADINAICQEAGMHAVR 181
V + SG+D+ A+ ++A M +R
Sbjct: 663 IVKATEYYSGSDLTALAKDAAMGPLR 688
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 39.5 bits (88), Expect = 6e-04
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = -3
Query: 432 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK-RLIFSTITTKMNLSDEVDLEEF 256
V V+ ATN +D A R R ++ PLP++ + + + + +++ E DLEE
Sbjct: 526 VLVLAATNLPWCIDEAARR--RFVKRTYIPLPEKETRYKHLSHLLHNQVHCLTEEDLEEL 583
Query: 255 VARPDRVSGADINAICQEAGMHAVR 181
V + SG+DI A+ ++A M +R
Sbjct: 584 VNLTEGYSGSDITALAKDAAMGPLR 608
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 329 RLSGSGNSIFLSRRPGLSNAGSNVSARFVAIITLT 433
+L+ S I +RPG S+ G+ + +FV +T+T
Sbjct: 446 KLTASKEQIASPKRPGPSDNGNEIPTKFVQKVTIT 480
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +2
Query: 170 YLFSLTACMPAS*QMALMSAPDTRSGRATNSSKSTSS 280
Y + ++ P+S + S+P + S ++++SSKS+SS
Sbjct: 145 YFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSS 181
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 26.2 bits (55), Expect = 5.6
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -2
Query: 106 NMNFINKRHFSVDCVLICLQLE 41
N++F+N+ SVD V+IC+ ++
Sbjct: 552 NLSFVNETTVSVDKVVICIPMD 573
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,878
Number of Sequences: 5004
Number of extensions: 41276
Number of successful extensions: 135
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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