Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_O23
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    28   0.12 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   2.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   4.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   4.5  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
 Frame = -3

Query: 525 RFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD-----PALLRPGRLD 361
           R D     DR      ++ +++MD  D+   +  +   +  DT+D      ++ R  R+D
Sbjct: 389 RIDRMDRMDRMDTMDTMDRIDRMDRMDRIDRIDRMHTMDTMDTMDRTDKMSSMDRMDRMD 448

Query: 360 RKIEFPLPDRRQKRLIFSTITTKMNLSDEVDLEEFVARPDRVSGAD 223
           R       DR  K      +  +M+  D +D  + + R DR+   D
Sbjct: 449 RVDRMDTMDRTDKMSSMDRM-DRMDRVDTMDTMDTMDRMDRMDRMD 493



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -3

Query: 519 DAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDR 358
           D     DR  +   ++ +++MD  D+T  +  I   ++ D +D  + R  R+DR
Sbjct: 481 DTMDRMDRMDRMDRMDRMDRMDTMDRTDKMSRIDRMDKIDRMD-RMDRTNRMDR 533


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 266 WKSSWLDRTACPAPTS 219
           W S WLD++A PA  S
Sbjct: 260 WVSFWLDQSAVPARVS 275


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 266 WKSSWLDRTACPAPTS 219
           W S WLD++A PA  S
Sbjct: 260 WVSFWLDQSAVPARVS 275


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +1

Query: 205 LTDGVDVGAGHAVRSSHELFQIHFIRKVHLGSDCRENQTFLTPIW 339
           L DG D G   A  SS  L  +  +   H+     +NQ   T  W
Sbjct: 13  LLDGYDAGVRPAENSSQPLAVVFGLSLHHIIDVDEKNQILTTNCW 57


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 266 WKSSWLDRTACPA 228
           W S WL+R A PA
Sbjct: 239 WVSFWLNRNATPA 251


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 266 WKSSWLDRTACPA 228
           W S WL+R A PA
Sbjct: 239 WVSFWLNRNATPA 251


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 266 WKSSWLDRTACPA 228
           W S WL+R A PA
Sbjct: 178 WVSFWLNRNATPA 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,793
Number of Sequences: 438
Number of extensions: 2620
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)