Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_O22
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 31 0.19
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 29 0.75
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma... 27 2.3
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po... 27 2.3
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 27 4.0
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo... 27 4.0
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 26 5.3
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 9.2
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 25 9.2
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 9.2
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 25 9.2
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 31.1 bits (67), Expect = 0.19
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -2
Query: 653 PTYEVLAKIMKVIINRRVTGPGDFLGH 573
P +EV+++I + + R+VT P +FL H
Sbjct: 324 PAFEVVSQIFRGLTGRKVTTPAEFLSH 350
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 29.1 bits (62), Expect = 0.75
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -1
Query: 324 YISSKKLHVKNTGKNDKAL-----YDDDFGDSDTEKEPDAYLERVKAE 196
Y + +H++ D ++ +DDD SD E AYLE +KAE
Sbjct: 473 YYGNIPVHIQENAPKDSSIPPLFEFDDDLELSDLTPEQFAYLEMLKAE 520
>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 629 FWLELRMSVQIXLCYXTFIFVFQF 700
FWL+L M + + + + IF+ QF
Sbjct: 194 FWLQLGMIIAVVVSFIVMIFILQF 217
>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 458
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 499 ETFV*GIQIACRRLXMNTLWPGVLWCPKKSPGPVTL 606
+T + I ++ + + +N + +LW K P VTL
Sbjct: 31 DTLICSIPVSAKNVDLNIPFKNILWVDKTGPNSVTL 66
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 656 GPTYEVLAKIMKVIINRRVTGPGDFLGHH 570
G Y VL + +I+++R T P L HH
Sbjct: 571 GKVYVVLEALFDLILSQRFTNPSPQLQHH 599
>SPCC553.12c ||SPCC794.13|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 521
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 565 VLWCPKKSPGPVTLLLMMTFMIL 633
V WCP K G +T +L F +L
Sbjct: 164 VNWCPSKLGGTITYILFWMFSLL 186
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 572 HKTPGHSVFIXRRRQAICIP*TKVSYTF 489
H+ GH+ F ++A+C P T+ TF
Sbjct: 318 HQVGGHTAFFRFSKRAVCKPLTRNENTF 345
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -1
Query: 465 FEEIASVNFARGGASST-KSFDFEIELKLGSVHTFSSI-EKGEYDKLFNYIS 316
FE + S +R +ST K DF++EL+ S + + + + G D+L +S
Sbjct: 512 FEVLDSSYVSRKAKASTLKPLDFDVELRASSSYLRTKVYQDGLIDQLLELLS 563
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 378 SVHTFSSIEKGEYDKLFNYISSKK 307
SVHTF+ K D LF Y ++K
Sbjct: 484 SVHTFAFASKYALDALFKYTRARK 507
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -1
Query: 375 VHTFSSIEKGEYDKLFNYISSKKLHVKNTG 286
VH F++ K KLF+ + +K++ + N+G
Sbjct: 331 VHQFANDSKRPLSKLFSNLITKRISLPNSG 360
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -1
Query: 312 KKLHVKN-TGKNDKALYDDDFGDSDTEKEPD 223
+KLH ++ G N + +D+F D ++E +PD
Sbjct: 215 EKLHSQSLVGNNCEVNSEDEFSDLESEVDPD 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,172
Number of Sequences: 5004
Number of extensions: 48383
Number of successful extensions: 150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -