Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_O22
         (780 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3...   105   5e-23
U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4 p...   100   1e-21
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    29   4.9  

>AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3
           protein.
          Length = 689

 Score =  105 bits (251), Expect = 5e-23
 Identities = 51/114 (44%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
 Frame = -1

Query: 528 GYLYPLDKGFIYVHKPPVHIRFEEIASVNFARGGASS-TKSFDFEIELKLGSVHTFSSIE 352
           G LYP++KGF+++ KP ++IRFEEI+S +FAR  + + T++FDFEI+LK GS  TFS+++
Sbjct: 350 GLLYPMEKGFLFIQKPVMYIRFEEISSCHFARSDSGTVTRTFDFEIDLKTGSSLTFSAMD 409

Query: 351 KGEYDKLFNYISSKKLHVKNTGKNDKALYDDDFGDSDTEKEPDAYLERVKAEAK 190
           K E +KLF+Y++ K++ ++N+ + D       +G SD E + D Y   VKAE +
Sbjct: 410 KEENNKLFDYLNKKEIKIRNSHRIDNK--SAGYGSSD-EDDIDPYKSTVKAEGR 460



 Score = 36.3 bits (80), Expect = 0.025
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -2

Query: 659 SGPTYEVLAKIMKVIINRRVTGPGDFLGHHKTP 561
           +GP YE ++ + K I N +VT PG FLG   TP
Sbjct: 307 TGPIYETISILFKSICNLKVTVPGRFLGSSGTP 339


>U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4
           protein.
          Length = 697

 Score =  100 bits (240), Expect = 1e-21
 Identities = 49/114 (42%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
 Frame = -1

Query: 528 GYLYPLDKGFIYVHKPPVHIRFEEIASVNFARGGASS-TKSFDFEIELKLGSVHTFSSIE 352
           G LYP++KGF+++HKP ++IRFEEI+S +FAR  + + T++FDFEI+LK G   TF+++E
Sbjct: 350 GLLYPMEKGFLFIHKPAMYIRFEEISSCHFARSDSGTVTRTFDFEIDLKYGGPLTFNAME 409

Query: 351 KGEYDKLFNYISSKKLHVKNTGKNDKALYDDDFGDSDTEKEPDAYLERVKAEAK 190
           K E +KLF+Y++ K + ++N+ + +  + D     SD E +P  Y   V AE +
Sbjct: 410 KEENNKLFDYLNKKNIKIRNSQRVENTVAD----SSDDEIDP--YKAAVTAEGR 457



 Score = 35.9 bits (79), Expect = 0.032
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 659 SGPTYEVLAKIMKVIINRRVTGPGDFLGHHKTP 561
           +GP YE ++ + K I N ++T PG FLG   TP
Sbjct: 307 TGPIYETISILFKSICNLKITVPGRFLGSSGTP 339


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
            autosome protein2 protein.
          Length = 1758

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = -3

Query: 589  VTF*DTTRPPAIACSXQGGGRLSVSPRQRFH-IRSQATSTHTI*GDCVCELRSRGRFVDE 413
            VT+  TT PP++A +        +SP+ R   I S+A+S+ T+ GD +   + + +   +
Sbjct: 802  VTYTKTTVPPSVANTWNTEKAQLISPKPRSQTIFSEASSSMTV-GDALRAQQHQQKMDQQ 860

Query: 412  I-I*FRNRIEVGQRAHV*QYREGRI 341
            I I F+ + +   + H  Q + GRI
Sbjct: 861  IQIQFQQQQQQRFQHHQQQQQAGRI 885


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,412,786
Number of Sequences: 27780
Number of extensions: 278079
Number of successful extensions: 802
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)