Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_O19
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.19 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.3  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = +1

Query: 463 NLFFPPXXXGXGGGGFXXXXGGPPXXXPXXXFXGGXGG 576
           NLF      G G GGF    GGPP         GG GG
Sbjct: 178 NLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGG 215


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = -1

Query: 579 GXPXPPXKXXXGXXXXGAPPXXXKPPPPPTXXXGGKK 469
           G P PP     G    G PP    PPPPP    GG +
Sbjct: 759 GGPPPPPPPP-GVAGAGPPPP---PPPPPAVSAGGSR 791


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = -1

Query: 573 PXPPXKXXXGXXXXGAPPXXXKPPPPPTXXXGGKKKVG 460
           P PP           A      PPPPP+    GK  +G
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIG 328



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -2

Query: 575 PPXPPXKXXXGXXXGGPPXXXXNPPPPXP 489
           PP PP +         PP     PPPP P
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,441
Number of Sequences: 5004
Number of extensions: 29217
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)