Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_O18
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 118 1e-27
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 118 1e-27
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 87 3e-18
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 78 1e-15
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 38 0.001
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 29 0.60
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 25 9.7
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 118 bits (284), Expect = 1e-27
Identities = 59/132 (44%), Positives = 80/132 (60%)
Frame = -2
Query: 573 LYACLLNCSXPVXMEPCISFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKA 394
+YA L S P+ EP + V+ V E A+GGIY VLN++RGHVF E Q GTP++ +KA
Sbjct: 713 VYASTLLAS-PIIQEP-VFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKA 770
Query: 393 YLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPWRPVRTSEQALQRCTGNEKEERIEG 214
YLPVNESFGFT +LR T GQAFPQ VFDHW + P+ + + Q K + ++
Sbjct: 771 YLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKE 830
Query: 213 RSPRLNSIFGQI 178
P + ++
Sbjct: 831 NVPDYTEYYDRL 842
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 118 bits (284), Expect = 1e-27
Identities = 59/132 (44%), Positives = 80/132 (60%)
Frame = -2
Query: 573 LYACLLNCSXPVXMEPCISFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKA 394
+YA L S P+ EP + V+ V E A+GGIY VLN++RGHVF E Q GTP++ +KA
Sbjct: 713 VYASTLLAS-PIIQEP-VFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKA 770
Query: 393 YLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPWRPVRTSEQALQRCTGNEKEERIEG 214
YLPVNESFGFT +LR T GQAFPQ VFDHW + P+ + + Q K + ++
Sbjct: 771 YLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKE 830
Query: 213 RSPRLNSIFGQI 178
P + ++
Sbjct: 831 NVPDYTEYYDRL 842
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 87.0 bits (206), Expect = 3e-18
Identities = 45/101 (44%), Positives = 63/101 (62%)
Frame = -2
Query: 570 YACLLNCSXPVXMEPCISFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAY 391
Y+ L S P MEP + V+ P ++ IY +L RRRGHV ++ G+P+++V+A
Sbjct: 830 YSSFLTAS-PRLMEP-VYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRAL 887
Query: 390 LPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPWRPVRTS 268
+PV +S GF DLR +T GQA Q VFDHWQV+P P+ S
Sbjct: 888 IPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKS 928
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 78.2 bits (184), Expect = 1e-15
Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Frame = -2
Query: 486 VGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFD 307
+G +YGV+++RRG V +E GTP FIVKA +PV ESFGF ++ T G A+PQ +F
Sbjct: 878 LGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFH 937
Query: 306 HWQVLPWRP--VRTSEQALQ 253
+++L P V T+E+ L+
Sbjct: 938 GFEMLDENPFWVPTTEEELE 957
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/71 (26%), Positives = 40/71 (56%)
Frame = -2
Query: 543 PVXMEPCISFVKFSVPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGF 364
P+ +EP ++ V + P GG+ G L++R+ + + F ++A +P+N F +
Sbjct: 672 PMVLEPIMN-VSITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSMFSY 728
Query: 363 TADLRSNTGGQ 331
++D+R+ T G+
Sbjct: 729 SSDIRALTKGK 739
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 29.5 bits (63), Expect = 0.60
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +2
Query: 239 FPVQRCRACSEVRTGLQGRTCQWSNTHCGKACPPVLERKSAVKPNDS 379
+ + RC C E G C + C K C P + K K +DS
Sbjct: 414 YQIMRCALCGEFLKNAAGMQCIDCHYTCHKKCYPKVVTKCISKSSDS 460
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 365 LLPICVPTPADRPSRSAYSTIGRSXPGDPC 276
+LP+ + TPA P + YS G S C
Sbjct: 109 VLPLSINTPAQWPEKEVYSLQGTSIFNPVC 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,257
Number of Sequences: 5004
Number of extensions: 56170
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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