Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_O16
         (783 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39402-1|AAC99998.1|  367|Homo sapiens 199G4 protein.                  50   1e-05
BC003402-1|AAH03402.1|  420|Homo sapiens RNA binding motif prote...    50   1e-05
AK001152-1|BAA91521.1|  420|Homo sapiens protein ( Homo sapiens ...    50   1e-05

>U39402-1|AAC99998.1|  367|Homo sapiens 199G4 protein.
          Length = 367

 Score = 49.6 bits (113), Expect = 1e-05
 Identities = 24/61 (39%), Positives = 32/61 (52%)
 Frame = -3

Query: 625 EIRXLXXVPXAQCAFVQYXSRNXXXXXXEKXFNXXGXFGKRLTIKWGXLQGRQGXTEXND 446
           EIR +  V   QCAF+Q+ +R       EK FN     G+RL +KWG  Q  +G  +  D
Sbjct: 204 EIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKD 263

Query: 445 G 443
           G
Sbjct: 264 G 264



 Score = 37.5 bits (83), Expect = 0.054
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 732 PVLPPPEDKNX*YXVXWNLPDKVTEDELRGHFYXXGKL 619
           P L PPEDK         L D +TE +LR HFY  G++
Sbjct: 168 PRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEI 205


>BC003402-1|AAH03402.1|  420|Homo sapiens RNA binding motif protein
           22 protein.
          Length = 420

 Score = 49.6 bits (113), Expect = 1e-05
 Identities = 24/61 (39%), Positives = 32/61 (52%)
 Frame = -3

Query: 625 EIRXLXXVPXAQCAFVQYXSRNXXXXXXEKXFNXXGXFGKRLTIKWGXLQGRQGXTEXND 446
           EIR +  V   QCAF+Q+ +R       EK FN     G+RL +KWG  Q  +G  +  D
Sbjct: 257 EIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKD 316

Query: 445 G 443
           G
Sbjct: 317 G 317



 Score = 37.5 bits (83), Expect = 0.054
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 732 PVLPPPEDKNX*YXVXWNLPDKVTEDELRGHFYXXGKL 619
           P L PPEDK         L D +TE +LR HFY  G++
Sbjct: 221 PRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEI 258


>AK001152-1|BAA91521.1|  420|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10290 fis, clone MAMMA1002385, weakly similar to
           RIBONUCLEOPROTEIN RB97D. ).
          Length = 420

 Score = 49.6 bits (113), Expect = 1e-05
 Identities = 24/61 (39%), Positives = 32/61 (52%)
 Frame = -3

Query: 625 EIRXLXXVPXAQCAFVQYXSRNXXXXXXEKXFNXXGXFGKRLTIKWGXLQGRQGXTEXND 446
           EIR +  V   QCAF+Q+ +R       EK FN     G+RL +KWG  Q  +G  +  D
Sbjct: 257 EIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGRSQAARGKEKEKD 316

Query: 445 G 443
           G
Sbjct: 317 G 317



 Score = 37.5 bits (83), Expect = 0.054
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 732 PVLPPPEDKNX*YXVXWNLPDKVTEDELRGHFYXXGKL 619
           P L PPEDK         L D +TE +LR HFY  G++
Sbjct: 221 PRLDPPEDKTITTLYVGGLGDTITETDLRNHFYQFGEI 258


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,950,252
Number of Sequences: 237096
Number of extensions: 664070
Number of successful extensions: 900
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)