Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_O14
         (784 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117389-1|AAI17390.1|  499|Homo sapiens PRP31 pre-mRNA processi...   197   4e-50
AY040822-1|AAK77986.1|  499|Homo sapiens U4/U6 snRNP-associated ...   197   4e-50
AF308303-1|AAG48270.1|  278|Homo sapiens serologically defined b...    68   4e-11
AK098547-1|BAC05329.1|  364|Homo sapiens protein ( Homo sapiens ...    66   2e-10

>BC117389-1|AAI17390.1|  499|Homo sapiens PRP31 pre-mRNA processing
           factor 31 homolog (S. cerevisiae) protein.
          Length = 499

 Score =  197 bits (480), Expect = 4e-50
 Identities = 115/248 (46%), Positives = 148/248 (59%), Gaps = 3/248 (1%)
 Frame = -1

Query: 781 LLSXXEXTVSGXMXXXSXNFTLRXGSFILHKXX-QDTTPELRYKAAKLVSTKLTLAARVD 605
           LL     T+SG     S    L    +I H    Q   P+LR KAA+LV+ K TLAARVD
Sbjct: 251 LLGAQRKTLSGF----SSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVD 306

Query: 604 ACHESTDGHIGRQLRENTEKKLDKLQEXXXXXXXXXXXXPIEQSXXXXXXXXXXXXXXRY 425
           + HEST+G +G +L++  E+K DK QE            P++                R 
Sbjct: 307 SFHESTEGKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERL 366

Query: 424 AMTEFRKNANRLNFADIEDDACQEDLGYTRGTIGKSSTGRIRLPQIDEKTKVRISKTXXX 245
            +TE RK ANR++F +IE+DA QEDLG++ G +GKS +GR+R  Q++E TK RISKT   
Sbjct: 367 GLTEIRKQANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRVRQTQVNEATKARISKTLQR 426

Query: 244 XXXXXXQ-YGGATSIRRQVSGTASSVAFTPLQGLEIVNPQAAETRTNEGNAKYFSNTSGF 68
                   YGG ++IR + SGTASSVAFTPLQGLEIVNPQAAE +  E N KYFS+ + F
Sbjct: 427 TLQKQSVVYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQKYFSSMAEF 486

Query: 67  LSV-GKKS 47
           L V G+KS
Sbjct: 487 LKVKGEKS 494


>AY040822-1|AAK77986.1|  499|Homo sapiens U4/U6 snRNP-associated 61
           kDa protein protein.
          Length = 499

 Score =  197 bits (480), Expect = 4e-50
 Identities = 115/248 (46%), Positives = 148/248 (59%), Gaps = 3/248 (1%)
 Frame = -1

Query: 781 LLSXXEXTVSGXMXXXSXNFTLRXGSFILHKXX-QDTTPELRYKAAKLVSTKLTLAARVD 605
           LL     T+SG     S    L    +I H    Q   P+LR KAA+LV+ K TLAARVD
Sbjct: 251 LLGAQRKTLSGF----SSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVD 306

Query: 604 ACHESTDGHIGRQLRENTEKKLDKLQEXXXXXXXXXXXXPIEQSXXXXXXXXXXXXXXRY 425
           + HEST+G +G +L++  E+K DK QE            P++                R 
Sbjct: 307 SFHESTEGKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERL 366

Query: 424 AMTEFRKNANRLNFADIEDDACQEDLGYTRGTIGKSSTGRIRLPQIDEKTKVRISKTXXX 245
            +TE RK ANR++F +IE+DA QEDLG++ G +GKS +GR+R  Q++E TK RISKT   
Sbjct: 367 GLTEIRKQANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRVRQTQVNEATKARISKTLQR 426

Query: 244 XXXXXXQ-YGGATSIRRQVSGTASSVAFTPLQGLEIVNPQAAETRTNEGNAKYFSNTSGF 68
                   YGG ++IR + SGTASSVAFTPLQGLEIVNPQAAE +  E N KYFS+ + F
Sbjct: 427 TLQKQSVVYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQKYFSSMAEF 486

Query: 67  LSV-GKKS 47
           L V G+KS
Sbjct: 487 LKVKGEKS 494


>AF308303-1|AAG48270.1|  278|Homo sapiens serologically defined
           breast cancer antigen NY-BR-99 protein.
          Length = 278

 Score = 67.7 bits (158), Expect = 4e-11
 Identities = 39/87 (44%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
 Frame = -1

Query: 781 LLSXXEXTVSGXMXXXSXNFTLRXGSFILHKXX-QDTTPELRYKAAKLVSTKLTLAARVD 605
           LL     T+SG     S    L    +I H    Q   P+LR KAA+LV+ K TLAARVD
Sbjct: 171 LLGAQRKTLSGF----SSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVD 226

Query: 604 ACHESTDGHIGRQLRENTEKKLDKLQE 524
           + HEST+G +G +L++  E+K DK QE
Sbjct: 227 SFHESTEGKVGYELKDEIERKFDKWQE 253


>AK098547-1|BAC05329.1|  364|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25681 fis, clone TST04131. ).
          Length = 364

 Score = 65.7 bits (153), Expect = 2e-10
 Identities = 38/86 (44%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
 Frame = -1

Query: 781 LLSXXEXTVSGXMXXXSXNFTLRXGSFILHKXX-QDTTPELRYKAAKLVSTKLTLAARVD 605
           LL     T+SG     S    L    +I H    Q   P+LR KAA+LV+ K TLAARVD
Sbjct: 251 LLGAQRKTLSGF----SSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVD 306

Query: 604 ACHESTDGHIGRQLRENTEKKLDKLQ 527
           + HEST+G +G +L++  E+K DK Q
Sbjct: 307 SFHESTEGKVGYELKDEIERKFDKWQ 332


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,656,661
Number of Sequences: 237096
Number of extensions: 1431348
Number of successful extensions: 3220
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3216
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)