Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_O11
(781 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 124 1e-29
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 124 1e-29
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 87 3e-18
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 78 1e-15
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 32 0.080
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 29 0.57
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 26 7.0
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 25 9.2
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 124 bits (299), Expect = 1e-29
Identities = 76/198 (38%), Positives = 109/198 (55%), Gaps = 5/198 (2%)
Frame = -1
Query: 757 SKGVQYLNEIKDSVVA-----DSSGPLRKELWLKRICVVLDSTSMM*HSILMPSIEVVAK 593
+K V YLNEIKDSVVA GP+ +E +LD + +I +++
Sbjct: 650 TKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNILDVV-LHADAIHRGGGQIIPT 708
Query: 592 SFQQLEDACTHVC*LLSPVLWSLYIFVKFSVXEVAVGGIYGVLNRRRGHVFEESQVAGTP 413
+ +++ A T L SP++ V+ V E A+GGIY VLN++RGHVF E Q GTP
Sbjct: 709 A-RRVVYASTL---LASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTP 764
Query: 412 MFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPWRPVRTSEQALQRCTGNEK 233
++ +KAYLPVNESFGFT +LR T GQAFPQ VFDHW + P+ + + Q K
Sbjct: 765 LYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARK 824
Query: 232 EERIEGRSPRLNSIFGQI 179
+ ++ P + ++
Sbjct: 825 RKGLKENVPDYTEYYDRL 842
Score = 99 bits (238), Expect = 4e-22
Identities = 47/75 (62%), Positives = 53/75 (70%)
Frame = -3
Query: 707 FQWXAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLME 528
F W +KEG M EENLR RFNI DV LH DAIHRGGGQIIPT RR +YA L A P + E
Sbjct: 667 FAWASKEGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQE 726
Query: 527 PVYLCEIQCX*SSCG 483
PV+L EIQ ++ G
Sbjct: 727 PVFLVEIQVSENAMG 741
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 124 bits (299), Expect = 1e-29
Identities = 76/198 (38%), Positives = 109/198 (55%), Gaps = 5/198 (2%)
Frame = -1
Query: 757 SKGVQYLNEIKDSVVA-----DSSGPLRKELWLKRICVVLDSTSMM*HSILMPSIEVVAK 593
+K V YLNEIKDSVVA GP+ +E +LD + +I +++
Sbjct: 650 TKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNILDVV-LHADAIHRGGGQIIPT 708
Query: 592 SFQQLEDACTHVC*LLSPVLWSLYIFVKFSVXEVAVGGIYGVLNRRRGHVFEESQVAGTP 413
+ +++ A T L SP++ V+ V E A+GGIY VLN++RGHVF E Q GTP
Sbjct: 709 A-RRVVYASTL---LASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTP 764
Query: 412 MFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPWRPVRTSEQALQRCTGNEK 233
++ +KAYLPVNESFGFT +LR T GQAFPQ VFDHW + P+ + + Q K
Sbjct: 765 LYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARK 824
Query: 232 EERIEGRSPRLNSIFGQI 179
+ ++ P + ++
Sbjct: 825 RKGLKENVPDYTEYYDRL 842
Score = 99 bits (238), Expect = 4e-22
Identities = 47/75 (62%), Positives = 53/75 (70%)
Frame = -3
Query: 707 FQWXAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLME 528
F W +KEG M EENLR RFNI DV LH DAIHRGGGQIIPT RR +YA L A P + E
Sbjct: 667 FAWASKEGPMFEENLRSCRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQE 726
Query: 527 PVYLCEIQCX*SSCG 483
PV+L EIQ ++ G
Sbjct: 727 PVFLVEIQVSENAMG 741
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 87.0 bits (206), Expect = 3e-18
Identities = 37/67 (55%), Positives = 47/67 (70%)
Frame = -3
Query: 707 FQWXAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLME 528
FQW +EG + +E +R V F + DV L + I+RGGGQIIPT RR Y+ LTA PRLME
Sbjct: 783 FQWGTREGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLME 842
Query: 527 PVYLCEI 507
PVY+ E+
Sbjct: 843 PVYMVEV 849
Score = 80.6 bits (190), Expect = 2e-16
Identities = 36/70 (51%), Positives = 49/70 (70%)
Frame = -1
Query: 478 IYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQ 299
IY +L RRRGHV ++ G+P+++V+A +PV +S GF DLR +T GQA Q VFDHWQ
Sbjct: 859 IYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQ 918
Query: 298 VLPWRPVRTS 269
V+P P+ S
Sbjct: 919 VVPGDPLDKS 928
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 78.2 bits (184), Expect = 1e-15
Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Frame = -1
Query: 487 VGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFD 308
+G +YGV+++RRG V +E GTP FIVKA +PV ESFGF ++ T G A+PQ +F
Sbjct: 878 LGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFH 937
Query: 307 HWQVLPWRP--VRTSEQALQ 254
+++L P V T+E+ L+
Sbjct: 938 GFEMLDENPFWVPTTEEELE 957
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 599 GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQ 504
GQ+I + + L PRLM +Y C++Q
Sbjct: 841 GQVISVVKESIRHGFLGWSPRLMLAMYSCDVQ 872
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 32.3 bits (70), Expect = 0.080
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = -1
Query: 484 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 332
GG+ G L++R+ + + F ++A +P+N F +++D+R+ T G+
Sbjct: 691 GGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSMFSYSSDIRALTKGK 739
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 29.5 bits (63), Expect = 0.57
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +3
Query: 240 FPVQRCRACSEVRTGLQGRTCQWSNTHCGKACPPVLERKSAVKPNDS 380
+ + RC C E G C + C K C P + K K +DS
Sbjct: 414 YQIMRCALCGEFLKNAAGMQCIDCHYTCHKKCYPKVVTKCISKSSDS 460
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 582 CWNDLATTSMDGISMECYIIDVESNTTQI 668
CW++L+TTS + + II + TT I
Sbjct: 211 CWDELSTTSPESSKVSEPIIQDNTQTTHI 239
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 366 LLPICVPTPADRPSRSAYSTIGRSXPGDPC 277
+LP+ + TPA P + YS G S C
Sbjct: 109 VLPLSINTPAQWPEKEVYSLQGTSIFNPVC 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,166,274
Number of Sequences: 5004
Number of extensions: 66566
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -