Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_O09
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    29   0.57 
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    27   2.3  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    27   3.1  
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    27   3.1  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   5.4  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   9.4  

>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = -3

Query: 727 DXRRSRKKEQNKNAATRYRQKKKAEVEVL 641
           D +R R  E+N+ AA+++RQKKK  ++ L
Sbjct: 10  DEKRRRILERNRIAASKFRQKKKEWIKEL 38


>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 552 PLGSESLFGGQSTSPRVRCDAGAGSAPP 635
           P GS S+FG  +T+       G+ SAPP
Sbjct: 34  PFGSGSIFGSTNTNVGAGGPTGSSSAPP 61


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 721 RRSRKKEQNKNAATRY--RQKKKAEVEVLLKGGADPAPASHRTR 596
           +R +  E+ +N+ T    RQ  K+ VEV+ KGG     AS+  +
Sbjct: 543 KRKQMAEKRRNSGTEQVVRQLSKSNVEVIGKGGERKKVASNSNK 586


>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 727 DXRRSRKKEQNKNAATRYRQKKKAEVEVLLK 635
           D +R R  E+N+ AA++ RQKKK   + L K
Sbjct: 267 DMKRRRFLERNRIAASKCRQKKKLWTQNLEK 297


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 20/75 (26%), Positives = 29/75 (38%)
 Frame = -3

Query: 709 KKEQNKNAATRYRQKKKAEVEVLLKGGADPAPASHRTRGEVL*PPKRDSLPKGSDA*SFQ 530
           ++ +N N  T       A+ +      + P PA H T   V  P  +      S    FQ
Sbjct: 168 EQARNANTETSNPPFASAQTQGQEHRPSSPNPAEHMTGAYVNTPLNQPPSYAASTQPEFQ 227

Query: 529 GEGSNQVNQSTTPPP 485
              S   + S+TPPP
Sbjct: 228 QTTSPIFSSSSTPPP 242


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 178  YKYTYFYNNECDLSSK*IN 234
            Y Y YF N +C++ SK +N
Sbjct: 1589 YAYPYFINFQCEMFSKVLN 1607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,290
Number of Sequences: 5004
Number of extensions: 51562
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)