Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_O08
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc...    29   0.70 
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    27   3.7  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    26   4.9  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.9  
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl...    26   4.9  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    26   4.9  
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    25   8.6  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   8.6  

>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 177

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 518 DARAVRPRASCLVYTAPSTNDTRAGTVQQLSLS 420
           DA A+    S L +  P TND  A TVQ L+L+
Sbjct: 144 DAYAMHKDFSTLKFDTPETNDELAKTVQSLALN 176


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 183 AFLLKLLDVLS*FVIMVHIFFLCIGLILLSVENVGSRLQCWEQCGMAKFGRLF 25
           A+L+ LL +L      +HIF + I  IL S+  +      W Q     FGR F
Sbjct: 196 AYLVLLLQILGPKKTWMHIFVIIIVQILFSIPFLAYFWSYWTQA--FDFGRAF 246


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -3

Query: 265 PRFPSDDTQATRLTVCLG--LDESHR 194
           P FPSD+ +  R+ +C G  L   HR
Sbjct: 835 PTFPSDNCETNRVVICWGATLQAPHR 860


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/47 (21%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +2

Query: 47  IPHCSQHCNLEPTFSTDNNI-NPIQRKKIWTIITNHDRTSNSFSKKA 184
           I HC +  +L P+F+  +N+ +P+Q+ +  + +++  R   ++ +++
Sbjct: 213 ISHCERSVSLSPSFAPPSNVKSPVQQHR--SFVSSSARAKKNWGRQS 257


>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = -2

Query: 707 LTIGDEEADEQRXAECVVGDY--RSASLGCGHAQDS--IEFRSPCSSTVYTCH-GAWQAG 543
           + IG+E+++EQ     +VGDY    AS+   H +++   E  +   + +   H G+ Q G
Sbjct: 132 INIGEEQSNEQIKLATLVGDYLLGKASVDLAHLENNAITEIMASVIANLVEGHFGSRQNG 191

Query: 542 SKG 534
           S G
Sbjct: 192 SVG 194


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 379 TPGCTERSHEWDITLSDSCCTVPARVSLVD 468
           T   T  SHE+  TL+++  TVP  V +V+
Sbjct: 114 TTTITSGSHEFTTTLAEASGTVPGTVEVVE 143


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 376 ATPGCTERSHEWDITLSDSCCTVPARVSLVDGAVY 480
           ATP        + IT  D C  +P ++S+ +GA++
Sbjct: 118 ATPPYDGTLRTYYITTEDFCTKLPKQISVEEGALF 152


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 400 SHEWDITLSDSCCTVPARVSLV 465
           S EW +  +DS C VP   SLV
Sbjct: 523 SVEWQLLYNDSSCDVPLLSSLV 544


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,869
Number of Sequences: 5004
Number of extensions: 47635
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)