Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_O08
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 29 5.1
02_02_0110 - 6848160-6848264,6849442-6849585 29 5.1
11_01_0405 + 3079275-3079622,3079816-3079903,3081411-3081543,308... 28 6.8
09_04_0097 - 14573499-14574110,14574977-14575017,14575424-145756... 28 6.8
02_03_0022 + 14027429-14027552,14027690-14027739,14027856-140279... 28 6.8
05_03_0479 + 14529783-14530613 28 9.0
04_03_0349 - 14738360-14738385,14738762-14738807,14738887-147391... 28 9.0
04_03_0097 + 11166422-11166529,11166647-11167277,11167385-11167533 28 9.0
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688... 28 9.0
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 171 LVKKLNSFRCDSSKPRQTVSLVACVSSEGKRGQ*RHQNEDRRRRAD 308
L+KKL + D+ KP V +V C + Q + + E + RR +
Sbjct: 107 LLKKLEAVGSDTGKPTCEVKIVDCGEVSDSQNQLKGEKEKKLRRTE 152
>02_02_0110 - 6848160-6848264,6849442-6849585
Length = 82
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Frame = -2
Query: 557 AWQAGSKGF-VLVYDARAVRPRASC-----LVYTAPSTNDTRAGTVQQLSLSVMSHSCDR 396
AW+ G G A V A C LV TA TRAG V +L + ++ C R
Sbjct: 14 AWRQGRGGCRCRACPAGVVHNLAGCYPPPELVQTAEKRTPTRAGVVGELGPAEVAALCHR 73
Query: 395 SVQP 384
+QP
Sbjct: 74 RMQP 77
>11_01_0405 +
3079275-3079622,3079816-3079903,3081411-3081543,
3081642-3082395
Length = 440
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = -2
Query: 524 VYDARAVRPRASCLVYTAPSTNDTRAGTVQQLSLSVMSHSCDRSVQPGVARDKA 363
V+ R R R CL+++ P+++ GTV S+++HS + S V+ K+
Sbjct: 246 VFGTRGPR-RMCCLMHSIPASSLEAGGTVPSQPDSILAHSLNESSFRSVSFSKS 298
>09_04_0097 -
14573499-14574110,14574977-14575017,14575424-14575616,
14575697-14575837,14575970-14576197,14576297-14576552,
14576866-14577069,14577157-14577245,14577346-14577416,
14577498-14577579,14577653-14577715,14578018-14578155
Length = 705
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 80 PTFSTDNNINPIQRKKIWTIITNHDRTSNSFSKKAKQFS 196
P F N+ +P+ RK I H R N F + +QF+
Sbjct: 487 PDFRGKNHTSPVYRKLTSKQIVEHHRRFNEFVRDQQQFT 525
>02_03_0022 +
14027429-14027552,14027690-14027739,14027856-14027966,
14028100-14028180
Length = 121
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 153 IEHLIVLVKKLNSFRCDSSKPRQTVSLVACVSSEGKRG 266
IEH++ ++ LN CD + +TV+ C + G+ G
Sbjct: 75 IEHILSVLDFLNVLYCDQTNKMKTVTCGICRHNYGRTG 112
>05_03_0479 + 14529783-14530613
Length = 276
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 524 VYDARAVRPRASCLVYTAPSTNDTRAGTVQQLSLSVMSHS 405
VYD A+R + S V PS +DT + +Q+ L H+
Sbjct: 131 VYDDAALRIKGSHAVTNFPSDSDTPSAKAKQMKLHPRRHT 170
>04_03_0349 -
14738360-14738385,14738762-14738807,14738887-14739123,
14739213-14739332,14739702-14739758,14740262-14740318,
14740412-14740468,14742372-14742531,14742972-14743006,
14743083-14743151,14743282-14743333,14743660-14743739,
14743832-14743939,14744583-14744771,14744846-14744984,
14745845-14746026,14746113-14746316,14746651-14746755
Length = 640
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -2
Query: 437 QQLSLSVMSHSCDRSVQPGVARDKAYNLTLNGT 339
++L LS+ H+ R VQPGVAR+ N ++ T
Sbjct: 467 RELQLSLNKHA--RKVQPGVARESQVNQNMHVT 497
>04_03_0097 + 11166422-11166529,11166647-11167277,11167385-11167533
Length = 295
Score = 27.9 bits (59), Expect = 9.0
Identities = 22/70 (31%), Positives = 28/70 (40%)
Frame = -2
Query: 674 RXAECVVGDYRSASLGCGHAQDSIEFRSPCSSTVYTCHGAWQAGSKGFVLVYDARAVRPR 495
+ A +G+ R S GCG F P V TC +W + V RA R
Sbjct: 231 KSANVTIGNTRDGS-GCGRTG----FHRPNGEWV-TCFCSWCWHGRSEVYFGKDRAAEER 284
Query: 494 ASCLVYTAPS 465
A+CL Y S
Sbjct: 285 AACLFYRQKS 294
>01_06_0996 +
33667663-33667900,33668019-33668091,33668785-33668841,
33668970-33669067,33669482-33669637,33669744-33670366,
33670484-33670560,33671551-33671805,33671950-33672067,
33672174-33672345,33672434-33672975
Length = 802
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/90 (23%), Positives = 36/90 (40%)
Frame = -2
Query: 611 DSIEFRSPCSSTVYTCHGAWQAGSKGFVLVYDARAVRPRASCLVYTAPSTNDTRAGTVQQ 432
D ++ S T+ GA A KG +VY A + P + TAP A + +
Sbjct: 341 DGVDVLSLSLGTLENSFGAQHAVQKGITVVYAAMNLGPAPQVVQNTAPWVITVAASKIDR 400
Query: 431 LSLSVMSHSCDRSVQPGVARDKAYNLTLNG 342
+V++ R + + N +L+G
Sbjct: 401 SFPTVITLGDKRQIVGQSLYSQGKNSSLSG 430
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,130,791
Number of Sequences: 37544
Number of extensions: 372080
Number of successful extensions: 1211
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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