Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_O08
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 559 ERGRPARRGSCWCTTRAPSGPALPAS 482
           + GRP+   +   TT  P   +LPAS
Sbjct: 219 QMGRPSYTTATMATTSTPGSGSLPAS 244


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 485 LVYTAPSTNDTRAGTVQQLS 426
           +++ APS  DTR    QQLS
Sbjct: 500 IIFQAPSLYDTREPVDQQLS 519


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 199 HRKLFSFFTKTIRCSIMICNYGPYFFSLY 113
           H K F  F KT   +    N   Y +SLY
Sbjct: 117 HAKDFDIFFKTALWAKNNINEAQYIYSLY 145


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 199 HRKLFSFFTKTIRCSIMICNYGPYFFSLY 113
           H K F  F KT   +    N   Y +SLY
Sbjct: 117 HAKDFDIFFKTALWAKNNINEAQYIYSLY 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,056
Number of Sequences: 438
Number of extensions: 3163
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)