Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_O02
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    27   2.1  
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    25   8.6  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   8.6  

>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 551 PFSLTCCGDILCKCSISVFSFIFITNPQN 637
           P  L CCGD LC C +S    ++I N +N
Sbjct: 542 PCFLECCGDFLC-CIVST-GLLYIWNIKN 568


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 252 ELSKAGTRRWGGIRRVVR 305
           +L KAG  RW GIR  VR
Sbjct: 242 QLGKAGRSRWLGIRPTVR 259


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 208 RRPSRAMFYDPNCTD 164
           RRPSR +FYD NC D
Sbjct: 954 RRPSRLIFYD-NCGD 967


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,648
Number of Sequences: 5004
Number of extensions: 59351
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)