Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_O02
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376...    30   2.2  
06_01_0824 - 6219477-6219556,6220427-6220808,6221415-6221448,622...    29   3.9  
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232           29   5.2  
04_04_0930 - 29480700-29480853,29481007-29483036                       28   9.0  

>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
            3764013-3764961,3766967-3767064,3768144-3768284,
            3768758-3768874,3768924-3769013,3769014-3771818
          Length = 1632

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 277  RRVPAFDNSFVFIDNDVAPAQHGRRPS 197
            RR+PA D SFV+ D   +    GR+PS
Sbjct: 962  RRIPALDYSFVWDDGSRSTNSFGRKPS 988


>06_01_0824 -
           6219477-6219556,6220427-6220808,6221415-6221448,
           6222214-6222370,6224449-6224575,6224663-6224914
          Length = 343

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 8/34 (23%)
 Frame = -3

Query: 315 HNNISPPFVYHPTA--------VYLPSITHSFLL 238
           H    PPFV+HPTA        V LPS+ H+F L
Sbjct: 269 HVTAPPPFVHHPTAAAQIQGSFVPLPSLPHNFRL 302


>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
          Length = 1035

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 292 RIPPHRRVPAFDNSFVFIDNDVAPAQHGRRPSRAMFYD 179
           R P      +FD++  F D +V+P     RP +AM+ D
Sbjct: 553 RHPVQHGYSSFDDTHEFSDQEVSPVVSRGRPRKAMYRD 590


>04_04_0930 - 29480700-29480853,29481007-29483036
          Length = 727

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 278 VGWYTKGGEILLCYESF 328
           +GW  +GGE+LL YE F
Sbjct: 399 IGWCHEGGELLLVYEYF 415


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,447,939
Number of Sequences: 37544
Number of extensions: 350316
Number of successful extensions: 625
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)