Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_O02
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-13|AAM15573.1| 1225|Caenorhabditis elegans Hypothetical p...    30   2.0  
U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical p...    30   2.0  
CU457737-4|CAM36325.1|  194|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF440511-1|AAL34099.1|  194|Caenorhabditis elegans SKR-9 protein.      29   3.5  
AC006730-6|AAX22282.1|  324|Caenorhabditis elegans Serpentine re...    28   8.0  
AC006730-5|AAF60478.4|  320|Caenorhabditis elegans Serpentine re...    28   8.0  

>U88173-13|AAM15573.1| 1225|Caenorhabditis elegans Hypothetical
           protein F46F11.1b protein.
          Length = 1225

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
 Frame = +2

Query: 515 NRSRKVTKCSFLPFSLTCCGDILCK-------CSISVFSFIFITNPQNDKTKYTIDNNNA 673
           N+ +++ K   L F  T CG  L +       C ++ FSF+  +    + T   + N   
Sbjct: 263 NKEKQIAKKIVLAFGQTVCGFDLLRANGKSYVCDVNGFSFVKTSTKYYEDTAKILGNQIV 322

Query: 674 HHYAR 688
            HYA+
Sbjct: 323 RHYAK 327


>U88173-12|AAK21388.1| 1339|Caenorhabditis elegans Hypothetical
           protein F46F11.1a protein.
          Length = 1339

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
 Frame = +2

Query: 515 NRSRKVTKCSFLPFSLTCCGDILCK-------CSISVFSFIFITNPQNDKTKYTIDNNNA 673
           N+ +++ K   L F  T CG  L +       C ++ FSF+  +    + T   + N   
Sbjct: 263 NKEKQIAKKIVLAFGQTVCGFDLLRANGKSYVCDVNGFSFVKTSTKYYEDTAKILGNQIV 322

Query: 674 HHYAR 688
            HYA+
Sbjct: 323 RHYAK 327


>CU457737-4|CAM36325.1|  194|Caenorhabditis elegans Hypothetical
           protein C52D10.7 protein.
          Length = 194

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 289 IPPHRRVPAFDNSFVFIDNDV 227
           +P H  VP +D +F+ IDNDV
Sbjct: 96  VPKHVNVPEWDTNFLKIDNDV 116


>AF440511-1|AAL34099.1|  194|Caenorhabditis elegans SKR-9 protein.
          Length = 194

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 289 IPPHRRVPAFDNSFVFIDNDV 227
           +P H  VP +D +F+ IDNDV
Sbjct: 96  VPKHVNVPEWDTNFLKIDNDV 116


>AC006730-6|AAX22282.1|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein40, isoform b protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +3

Query: 297 VVRYCYVMSHLYLPANYSTLCRRVMCFMHSFSEFL*XTQWLHLCFVSKRQNLFKIIFARV 476
           +  YC     +YL A+   L   +M  M +  E      WL  CF+ K Q + KI+   +
Sbjct: 74  IAGYCSGFLAVYLNASTHYLMAFMMASMSAQME------WLVYCFIKKHQTIGKILSTHI 127

Query: 477 V 479
           +
Sbjct: 128 I 128


>AC006730-5|AAF60478.4|  320|Caenorhabditis elegans Serpentine
           receptor, class i protein40, isoform a protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +3

Query: 297 VVRYCYVMSHLYLPANYSTLCRRVMCFMHSFSEFL*XTQWLHLCFVSKRQNLFKIIFARV 476
           +  YC     +YL A+   L   +M  M +  E      WL  CF+ K Q + KI+   +
Sbjct: 74  IAGYCSGFLAVYLNASTHYLMAFMMASMSAQME------WLVYCFIKKHQTIGKILSTHI 127

Query: 477 V 479
           +
Sbjct: 128 I 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,884,272
Number of Sequences: 27780
Number of extensions: 346631
Number of successful extensions: 900
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)