Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_N22
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0444 + 10340927-10341063,10341157-10341241,10341480-103415...    29   3.2  
05_07_0327 - 29275916-29276017,29276101-29276283,29276392-292764...    28   7.4  
12_02_1174 - 26696869-26698191                                         28   9.7  

>02_02_0444 +
           10340927-10341063,10341157-10341241,10341480-10341537,
           10343738-10345885,10345943-10346388
          Length = 957

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 21/59 (35%), Positives = 25/59 (42%)
 Frame = +1

Query: 535 GNGHGLLNVHGVRXVDRNMDGVGHWLLNWDSKRHWLLDGGKEQAHARGXGPVDGHLDGG 711
           G G  L +   +  +D   D VG  L   +    WL DG        G G VDG LDGG
Sbjct: 345 GGGGWLYDGATIEGLDGGGDVVGGGL---NGGGGWLYDGATVGGLDEGGGVVDGGLDGG 400



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 28/97 (28%), Positives = 32/97 (32%), Gaps = 6/97 (6%)
 Frame = +1

Query: 439  VNGHFDGNGDWPVDRVRXXXXXXXXXXXXXXYGNGHGLLNV---HGVRXVDRNMDGVGHW 609
            V G  DG G W  D                    G  +L      G   V   ++G G  
Sbjct: 765  VGGGLDGGGGWLYDGATVGGLVEGGGVVGGGLDGGGKVLGGGLDEGGDVVGGGLNGGGEE 824

Query: 610  L---LNWDSKRHWLLDGGKEQAHARGXGPVDGHLDGG 711
            L   L+      WL DGG       G   VDG LDGG
Sbjct: 825  LGGGLDEGGGGDWLYDGGTVGGLYGGGEAVDGVLDGG 861



 Score = 27.9 bits (59), Expect = 9.7
 Identities = 22/59 (37%), Positives = 24/59 (40%)
 Frame = +1

Query: 535 GNGHGLLNVHGVRXVDRNMDGVGHWLLNWDSKRHWLLDGGKEQAHARGXGPVDGHLDGG 711
           G G  L +   V  +D   D VG  L   D    WL DG        G G V G LDGG
Sbjct: 238 GGGGCLYDGATVGGLDGGGDVVGGGL---DGGGGWLYDGATVGGLDEGGGVVGGGLDGG 293


>05_07_0327 -
           29275916-29276017,29276101-29276283,29276392-29276453,
           29276590-29276671,29276922-29276987,29277297-29277359,
           29277466-29277570,29277678-29277887,29277988-29278103,
           29278875-29279082
          Length = 398

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 379 RDWLLDCYGHVPLNSYGVGPVNGHFDGNGDWPVDR 483
           +D L+D Y +VP   YG+ P       N D P DR
Sbjct: 67  KDGLMDNYKNVPQFLYGLSPAQIEMFMNDDNPYDR 101


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -2

Query: 752 PYPXPYPRCEARXGPPSRCPSTGPYP 675
           P P P PR   R  PP R P   P P
Sbjct: 123 PPPPPPPRTRTRVEPPHRPPPVKPQP 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,120,827
Number of Sequences: 37544
Number of extensions: 299795
Number of successful extensions: 751
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)