Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_N21
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    31   0.19 
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    27   3.1  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    27   4.1  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    26   5.4  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    26   5.4  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    25   9.5  

>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
 Frame = -1

Query: 594  YASRRXRFQHAA*SLE-HTEQTRQDGQVPGEDEGGPGD-------ASRREPQTE*TEENA 439
            YA +  R+Q      E   EQ R D     +DE  P D       A R E Q + T+++ 
Sbjct: 1187 YAGKILRYQRLTKEYEMRAEQIRNDYAAKCQDEPIPDDEARLFMQAQREEEQRKQTQDDN 1246

Query: 438  IQKGQE-EEGEVRQAGRRPGGRLGERY 361
            I K +E  + E    G    G  G RY
Sbjct: 1247 ISKSREASDEEYHDDGSSDSGYNGTRY 1273


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = -1

Query: 549 EHTEQTRQDGQVPGEDE----GGPGDASRR-EPQTE*TEENAIQKGQEEEGEVRQAGRRP 385
           EH   T+Q+ ++  EDE        +A R  E  +E ++E A  K  EEEGE  +   R 
Sbjct: 28  EHLRMTQQNAEIEKEDEEYNIEEEEEAERDIEISSESSDEEAELKKLEEEGEEVEKILRD 87

Query: 384 GGRLGERYI 358
             R+ +R I
Sbjct: 88  EERIKKRKI 96


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 513 PGEDEGGPGDASRREPQTE*TEENAIQKGQEEEGEVRQAGRRPGGR 376
           P E++      SRRE + +   +  IQ+  EE   V +   +P GR
Sbjct: 527 PNENDRVTKTQSRRETKVKRRRKARIQETSEESTVVNEPNEKPDGR 572


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 528 VESVPYVQGFRQHAGIXLVDLHMVR*HRRDWTRARDL 638
           VE + YV G R   G  L DL+  R   + W +  DL
Sbjct: 301 VEGILYVFGGRASDGTFLNDLYAFRLSSKHWYKLSDL 337


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = -2

Query: 617 VAAVLPDHMQVDEXDSSMLPKALNIRNRLDKTGKSQEKTKADPEMLLEGNLKQNRL 450
           VA ++ D + ++  ++ +  +A  + N  +  G    KTK  P + LEG +K N+L
Sbjct: 211 VAGLVKDSLSIELVNTDV--RASELLN--NGCGADFVKTKQSPPLALEGKIKPNQL 262


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 549 EHTEQTRQDGQVPGEDEG-GPGDASRREPQTE*TEENAIQKGQEE 418
           +  E+   DG   GE +G G G+   +  + E  EE  I++ +EE
Sbjct: 197 DEEEEEEDDGDGDGEGDGDGEGENDGKGSEEEEEEEIDIEEEEEE 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,774,621
Number of Sequences: 5004
Number of extensions: 51246
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)