Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_N18
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   111   1e-25
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    58   1e-09
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    58   1e-09
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    38   0.001
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    29   0.57 
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      28   1.3  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   4.0  
SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni...    26   5.3  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  111 bits (266), Expect = 1e-25
 Identities = 48/56 (85%), Positives = 54/56 (96%)
 Frame = -1

Query: 748 NSPAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 581
           NS +IQE+F+R+ +QF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 370 NSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 22/55 (40%), Positives = 38/55 (69%)
 Frame = -1

Query: 748 NSPAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 584
           N+ +I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct: 384 NTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 22/55 (40%), Positives = 38/55 (69%)
 Frame = -1

Query: 748 NSPAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 584
           N+ +I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct: 380 NTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
 Frame = -1

Query: 748 NSPAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN---DLVSEYQ 587
           N  +I  LFKR  +Q+  + +R AFL  Y  E + E +  E +S+ +   DL++EY+
Sbjct: 380 NHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 760 HLHRNSPAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 641
           H   NS  IQ L K I+   T  +R    ++ Y+G G+DE
Sbjct: 189 HAAENSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 370 KLPVMTNYLNEHNLFNTFLDIPPGLVE 290
           K+    ++L EHN+FNTFL    G+V+
Sbjct: 577 KITDCLSFLLEHNIFNTFLVYNEGIVK 603


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 748  NSPAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 593
            N+P +     ++ E+F+ +F RK  L WY   G+      E + N+N   SE
Sbjct: 1704 NNPHLLFTLYKLLERFSLIFLRKCALLWYCRYGVS----FETQPNLNFQNSE 1751


>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
           Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 228 CTYVNKKCLF*-ISLYKFQI*LSTRPGGISRNVLNRL 335
           C +V K  LF  + +Y     L   PGG+   VLNR+
Sbjct: 209 CKFVGKVSLFTTLIVYSLYDSLHPSPGGLKHQVLNRI 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,062
Number of Sequences: 5004
Number of extensions: 53408
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)