Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_N15
         (807 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235           30   2.5  
11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793           29   3.3  
11_01_0643 - 5174154-5174254,5174296-5174346,5174611-5174739,517...    29   3.3  
06_03_1354 - 29520376-29520582,29520668-29520795,29521015-295210...    29   3.3  
03_02_0504 - 8976973-8979414                                           28   7.6  

>03_02_0330 + 7502593-7504956,7505020-7506312,7522011-7522235
          Length = 1293

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
 Frame = +2

Query: 404 SRKWHDSVKMLRLEESGPLGAGGVIILKRFWNTMSSGPMGSFSXLVWRLGGLAR------ 565
           +R+W D V  L +     LGAGG     +     ++G + S     WR   + R      
Sbjct: 102 TRRWLDDVANLVMTAQQRLGAGGRSSATKATGAATAGSVSS-RRRAWRAAAVTRRSSAIP 160

Query: 566 -SAPRTQVKRPRRGPDLR 616
            S P TQ +  R GPD R
Sbjct: 161 SSTPPTQ-ENVREGPDAR 177


>11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793
          Length = 783

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -1

Query: 606 GPRLGRFTCVRGADRAR--PPSRQ 541
           GPR GRFTC  G +  R  PP+ +
Sbjct: 40  GPRFGRFTCYHGEEEKRWHPPANE 63


>11_01_0643 -
           5174154-5174254,5174296-5174346,5174611-5174739,
           5174869-5175118,5175220-5177157
          Length = 822

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -1

Query: 606 GPRLGRFTCVRGADRAR--PPSRQ 541
           GPR GRFTC  G +  R  PP+ +
Sbjct: 43  GPRFGRFTCYHGEEEKRWHPPANE 66


>06_03_1354 -
           29520376-29520582,29520668-29520795,29521015-29521099,
           29521169-29521522
          Length = 257

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 550 WRPRPVRATDASKAAETRTGPSFTNTS 630
           WRPRP  AT AS AA +  GP  T  +
Sbjct: 29  WRPRPRPATVASTAAMSVRGPGTTQAA 55


>03_02_0504 - 8976973-8979414
          Length = 813

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 545 RLGGLARSAPRTQVKRPRRGPDLRSLTRHTGRPK 646
           RLGG  R   R +V+RP R  D  ++     RP+
Sbjct: 283 RLGGRDRDDERREVRRPERRSDRDAIDGRADRPR 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,463,235
Number of Sequences: 37544
Number of extensions: 386611
Number of successful extensions: 883
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)