Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_N14
(794 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021481-5|CAA16336.2| 455|Caenorhabditis elegans Hypothetical ... 36 0.033
AF025468-4|AAB71045.1| 449|Caenorhabditis elegans Hypothetical ... 36 0.044
Z81044-6|CAB02806.1| 360|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical pr... 29 2.9
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 2.9
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 2.9
AF016418-10|AAK18896.1| 611|Caenorhabditis elegans Hypothetical... 29 2.9
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 3.8
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 3.8
Z81043-5|CAB02802.2| 278|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical pr... 24 7.5
AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like fact... 24 7.5
AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like fact... 24 7.6
Z82274-4|CAB05228.1| 429|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 28 8.9
U58750-14|AAB00655.4| 340|Caenorhabditis elegans Hypothetical p... 28 8.9
AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical ... 28 8.9
AC024842-7|AAF59620.1| 457|Caenorhabditis elegans Hypothetical ... 28 8.9
>AL021481-5|CAA16336.2| 455|Caenorhabditis elegans Hypothetical
protein Y43F4B.7 protein.
Length = 455
Score = 35.9 bits (79), Expect = 0.033
Identities = 32/141 (22%), Positives = 54/141 (38%), Gaps = 1/141 (0%)
Frame = -2
Query: 574 PLATSVIVMFAVAIFISYGLHCFVPVDVVWRGYVEXXXXXXXXXXXXXXXAEYXXXXXXX 395
P ++ +MF I ISY L +VP++ + + Y
Sbjct: 320 PFYQTIKLMFVACIMISYPLQFYVPMERIEKWITRKIPVDKQTLYI------YIARYSGV 373
Query: 394 XXXXXXXVSVPRLGLFISLFGALCLSALGICFPAIMEACVKF-PHDLKPIWLLKDXXXXX 218
+P L LFISL GA +++ + FP +E + ++L +K+
Sbjct: 374 ILTCAIAELIPHLALFISLIGAFSGASMALLFPPCIELLTSYAKNELSTGLWIKNIVLLT 433
Query: 217 XXXXXXXXGTYTALQAIFRSF 155
GTY+AL I ++F
Sbjct: 434 FAFIGFTTGTYSALIEIAKTF 454
>AF025468-4|AAB71045.1| 449|Caenorhabditis elegans Hypothetical
protein T27A1.5 protein.
Length = 449
Score = 35.5 bits (78), Expect = 0.044
Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 1/141 (0%)
Frame = -2
Query: 574 PLATSVIVMFAVAIFISYGLHCFVPVDVVWRGYVEXXXXXXXXXXXXXXXAEYXXXXXXX 395
P ++ VMF + I +SY L +VP++ V + +++ Y
Sbjct: 310 PFYQAIKVMFVLCILVSYPLQFYVPMERVEK-WIKRKVVEAKQEPMI-----YAIRFGGV 363
Query: 394 XXXXXXXVSVPRLGLFISLFGALCLSALGICFPAIMEACVKFPHDLKPIWL-LKDXXXXX 218
+P L LFISL G++ ++L + FP ++E + W+ +++
Sbjct: 364 LLTCAMAQLIPHLALFISLVGSVAGTSLTLVFPPLIELLCSYSKQELTKWVWIRNIGLMA 423
Query: 217 XXXXXXXXGTYTALQAIFRSF 155
GTY ++ I +F
Sbjct: 424 FAMVGFTTGTYASMVQIIEAF 444
>Z81044-6|CAB02806.1| 360|Caenorhabditis elegans Hypothetical
protein C30H6.2 protein.
Length = 360
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 473 HVPAPHHVHRHEAVQSVANEDGHREHHDDASR 568
H + H H H +++ + GH HHDD+ R
Sbjct: 78 HGHSHEHHHEHTDLENGTSGHGHSHHHDDSDR 109
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/64 (31%), Positives = 22/64 (34%)
Frame = +1
Query: 172 PAEPCTCRPPDPQCPPETAVRPSTARSVSDRAGTSRMLPL*PGNRCPAPTGTARRTER*T 351
P +PC PP P P T P AG S P P P P G +
Sbjct: 161 PCQPCPAGPPGPPGPDGTPGEPGGPGPAGSPAGPSGPGPAGP----PGPAGPPGNDGQPG 216
Query: 352 VPGG 363
PGG
Sbjct: 217 QPGG 220
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/54 (38%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +1
Query: 172 PAEPCTCRPPDPQCPPETAVRPSTARSVSDRAGTSRMLPL*PGNR-CPAPTGTA 330
P +PC PP P PP P A R GT P PG R P P G A
Sbjct: 146 PCKPCPQGPPGPPGPPGAPGDPGEA-GTPGRPGTD-AAPGSPGPRGPPGPAGEA 197
>Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical
protein F34D10.4 protein.
Length = 692
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = -3
Query: 468 PASEPRPLRPRASCSLNT 415
P PRP RPRAS SLNT
Sbjct: 437 PVPPPRPDRPRASTSLNT 454
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/54 (38%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +1
Query: 172 PAEPCTCRPPDPQCPPETAVRPSTARSVSDRAGTSRMLPL*PGNR-CPAPTGTA 330
P +PC PP P PP P A R GT P PG R P P G A
Sbjct: 141 PCKPCPQGPPGPPGPPGAPGDPGEA-GTPGRPGTD-AAPGSPGPRGPPGPAGEA 192
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/54 (38%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +1
Query: 172 PAEPCTCRPPDPQCPPETAVRPSTARSVSDRAGTSRMLPL*PGNR-CPAPTGTA 330
P +PC PP P PP P A R GT P PG R P P G A
Sbjct: 141 PCKPCPQGPPGPPGPPGAPGDPGEA-GTPGRPGTD-AAPGSPGPRGPPGPAGEA 192
>AF016418-10|AAK18896.1| 611|Caenorhabditis elegans Hypothetical
protein C49G7.1 protein.
Length = 611
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +2
Query: 89 CELRQGAVAGRTLLGVERARRLERAEDGLQSRVRAGHQT--HNA---HQKQQYVLQQPDR 253
C+L Q V RT+ +E +++++ ++ +RA +QT NA + VL P
Sbjct: 12 CKLSQEDVLSRTIAHLEDLQKVQKEVSNVRREIRATYQTGKTNASTLNTTTNPVLMLPTP 71
Query: 254 FQIVRELHAC 283
Q+ R+L C
Sbjct: 72 VQLSRQLGLC 81
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/54 (38%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +1
Query: 172 PAEPCTCRPPDPQCPPETAVRPSTARSVSDRAGTSRMLPL*PGNR-CPAPTGTA 330
P +PC PP P PP P A R GT P PG R P P G A
Sbjct: 148 PCKPCPQGPPGPPGPPGAPGDPGEA-GTPGRPGTD-ATPGLPGPRGPPGPPGEA 199
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/54 (38%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +1
Query: 172 PAEPCTCRPPDPQCPPETAVRPSTARSVSDRAGTSRMLPL*PGNR-CPAPTGTA 330
P +PC PP P PP P A R GT P PG R P P G A
Sbjct: 148 PCKPCPQGPPGPPGPPGAPGDPGEA-GTPGRPGTD-ATPGLPGPRGPPGPPGEA 199
>Z81043-5|CAB02802.2| 278|Caenorhabditis elegans Hypothetical
protein C29F3.6 protein.
Length = 278
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 180 AVYVPATRPTMPTRNSSTSFNSQIGFRSCGNFTH 281
++++ AT PTR S S+ + +G SCG +TH
Sbjct: 232 SLFLLATMVFFPTRFSVNSWVTFLGGNSCGRWTH 265
>Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical
protein F39H11.2 protein.
Length = 505
Score = 23.8 bits (49), Expect(2) = 7.5
Identities = 13/63 (20%), Positives = 19/63 (30%)
Frame = +2
Query: 365 HAHGQHECEETEQDAQHVFXXXXXXXXXXXXXXXXLHVPAPHHVHRHEAVQSVANEDGHR 544
+A QH ++ Q H P HH +H+ VQ
Sbjct: 145 YAQAQHRQQQQNQQQHHQQPQHFNHPSQQNQMIMQHRQPQMHHNQQHQMVQPQMTRHQMA 204
Query: 545 EHH 553
+HH
Sbjct: 205 QHH 207
Score = 22.6 bits (46), Expect(2) = 7.5
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +2
Query: 170 GLQSRVRAGHQTHNAHQKQQYV--LQQPDR 253
G+Q R GH +Q+QQ +QQ +R
Sbjct: 100 GVQMRPVQGHNVQQGYQRQQVANQIQQQNR 129
>AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like factor
protein.
Length = 505
Score = 23.8 bits (49), Expect(2) = 7.5
Identities = 13/63 (20%), Positives = 19/63 (30%)
Frame = +2
Query: 365 HAHGQHECEETEQDAQHVFXXXXXXXXXXXXXXXXLHVPAPHHVHRHEAVQSVANEDGHR 544
+A QH ++ Q H P HH +H+ VQ
Sbjct: 145 YAQAQHRQQQQNQQQHHQQPQHFNHPSQQNQMIMQHRQPQMHHNQQHQMVQPQMTRHQMA 204
Query: 545 EHH 553
+HH
Sbjct: 205 QHH 207
Score = 22.6 bits (46), Expect(2) = 7.5
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +2
Query: 170 GLQSRVRAGHQTHNAHQKQQYV--LQQPDR 253
G+Q R GH +Q+QQ +QQ +R
Sbjct: 100 GVQMRPVQGHNVQQGYQRQQVANQIQQQNR 129
>AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like factor
protein.
Length = 454
Score = 23.8 bits (49), Expect(2) = 7.6
Identities = 13/63 (20%), Positives = 19/63 (30%)
Frame = +2
Query: 365 HAHGQHECEETEQDAQHVFXXXXXXXXXXXXXXXXLHVPAPHHVHRHEAVQSVANEDGHR 544
+A QH ++ Q H P HH +H+ VQ
Sbjct: 145 YAQAQHRQQQQNQQQHHQQPQHFNHPSQQNQMIMQHRQPQMHHNQQHQMVQPQMTRHQMA 204
Query: 545 EHH 553
+HH
Sbjct: 205 QHH 207
Score = 22.6 bits (46), Expect(2) = 7.6
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +2
Query: 170 GLQSRVRAGHQTHNAHQKQQYV--LQQPDR 253
G+Q R GH +Q+QQ +QQ +R
Sbjct: 100 GVQMRPVQGHNVQQGYQRQQVANQIQQQNR 129
>Z82274-4|CAB05228.1| 429|Caenorhabditis elegans Hypothetical
protein JC8.6b protein.
Length = 429
Score = 27.9 bits (59), Expect = 8.9
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +3
Query: 141 GLVDWNERKMACRAVYVPATRPTMPTRNSSTSFNSQIGFRSCGNFTHASIIAGKQMPSAD 320
GLV + VYVP RP ST +SQ R+ N + + + +Q S
Sbjct: 66 GLVKDEPIDTSSHRVYVPPPRPVQRKPGPSTPGSSQYTVRNLSNLSGSPSMYDRQPASLP 125
Query: 321 RHSAP-NREM-NSPRR 362
R P EM NS +R
Sbjct: 126 RTVQPMGLEMGNSEQR 141
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -1
Query: 236 GRTAVSGGHCGSGGRHVHGSAGHLPLVPVDEPAP 135
G GG G GG + G +G PV PAP
Sbjct: 120 GGGGCGGGGGGGGGGYASGGSGGFASAPVSLPAP 153
>U58750-14|AAB00655.4| 340|Caenorhabditis elegans Hypothetical
protein F55G1.15 protein.
Length = 340
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 236 GRTAVSGGHCGSGGRHVHGSAGH 168
G ++ GH G G H HGSA H
Sbjct: 267 GEPRITTGHGGHGHSHGHGSADH 289
>AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical
protein Y44E3A.4 protein.
Length = 511
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 199 PDPQCPPETAVRPSTAR-SVSDRAGTSRMLPL*PGNRCPAPTGTARRTER*TVPGGARS 372
P P PP+ AV P A+ SV+D S + P P PAP+ + T+P A S
Sbjct: 278 PPPVNPPQPAVPPKPAKISVAD-PPPSTIAPAAPSAPAPAPSQLNPTSTSPTMPAIAPS 335
>AC024842-7|AAF59620.1| 457|Caenorhabditis elegans Hypothetical
protein Y59H11AR.4 protein.
Length = 457
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 370 SVPRLGLFISLFGALCLSALGICFPAIMEACVKFPHDLK 254
SVP G+ ++L G L L + FP + C++ L+
Sbjct: 306 SVPNFGVVVNLVGGSTLPLLVLIFPPLFAMCLEVRQKLE 344
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,313,933
Number of Sequences: 27780
Number of extensions: 263275
Number of successful extensions: 1274
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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