Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_N13
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    27   2.3  
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    26   5.3  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   7.0  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    26   7.0  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   9.3  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   9.3  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    25   9.3  

>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 417  SVITAYLPWRPKTSFPQPLATQFLLVSKLSPGSGRQIMLM 536
            ++I+ ++P+ PKTSFP     Q  L    S  +G ++  M
Sbjct: 1208 ALISRWIPFIPKTSFPSLAEIQSRLTYVTSVATGEKVKSM 1247


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -2

Query: 523 CLPDPGDSFD-TSKNCVA 473
           C+P+PG +FD   K+CV+
Sbjct: 49  CIPEPGSTFDPNEKSCVS 66


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +2

Query: 467 AVGDAVLAGVEAIPRVREADHVDVLGEVEGRXHPQERHVVLKAFRVEIFXY 619
           +  +A    + AIP   E D  +   E +G+   +E+ V       EIF Y
Sbjct: 837 SASEAAAPDLAAIPIPNEVDDAEAADEKDGKLVEEEQRVTGDVVFSEIFSY 887


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 8/37 (21%), Positives = 16/37 (43%)
 Frame = -3

Query: 228 AGLVAWGIGCGQKDVPAVYANVARMRSWVDRKMNAWG 118
           A  V WG+  G++ + +        ++W+      WG
Sbjct: 558 ASAVTWGVYPGREIIQSTIIAEVSFKAWLSESFQVWG 594


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -3

Query: 186 VPAVYANVARMRSWVDRKMNAWGYXNHHLHYLRHSQNK 73
           +P V  N A   SW+    N W     ++  L H++ +
Sbjct: 107 IPRVEGNAADPFSWIPDGKNVWDSPPKYIRVLSHNKKE 144


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 539 LGEVEGRXHPQERHVVLKAFRVEIFXY 619
           L +V+ R H +E H     FR  ++ Y
Sbjct: 864 LNKVQSRWHDEEHHYYKTGFRKRVYKY 890


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
 Frame = +2

Query: 134 FRSTQDLMRATLAXT--AGTS 190
           F +TQDL+R TLA T  +GTS
Sbjct: 578 FHATQDLLRKTLAYTNSSGTS 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,489
Number of Sequences: 5004
Number of extensions: 51447
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)