Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_N13
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    30   0.021
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.15 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   9.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 30.3 bits (65), Expect = 0.021
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 303 EGRDTCQGDGGAPLACP-IGDSRYKLAGLVAWGIGCGQ 193
           +G+D CQ D G P+        R    G+++WG  CG+
Sbjct: 340 KGKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAECGK 377



 Score = 25.0 bits (52), Expect = 0.80
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = -2

Query: 586 NDVALLXMXAPFNLAEHINMICLPDPG--DSFDTSKNCVANGWGKDVF 449
           ND+ALL         + +   CLP     DSF  S   V  GWG   F
Sbjct: 256 NDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVL-GWGHTSF 302


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +2

Query: 203 PMPQATSPANL*RLSPMGQARGAPPSPWQVSLPSCPP 313
           P   A  P      SP    RG+PP+P Q   P  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 25.8 bits (54), Expect = 0.46
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = +2

Query: 197 PHPMPQAT---SPANL*RLSPMGQARGAPPS--PWQVSLPSCPPAHTKLSCXRNLVPSLV 361
           PH  PQA    SP N  +  P G   GAPPS  P Q+ +      H      +  + S  
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASGIHQMQQLLQQHILSPT 86

Query: 362 RCSSELQR 385
           +  S +Q+
Sbjct: 87  QLQSFMQQ 94



 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +2

Query: 557 RXHPQERHVVLKAFRVEIFXYDYXLDXSHLGXXHS 661
           + HP   H V K    E+   DY     HL   H+
Sbjct: 273 KVHPLYGHGVCKWPGCEVICEDYQAFLKHLNTEHT 307


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 506 PRVREADHVDVLG 544
           P V E+D VDV+G
Sbjct: 200 PSVSESDEVDVIG 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,582
Number of Sequences: 438
Number of extensions: 4472
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)