Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_N12
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    29   0.74 
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    26   5.2  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   5.2  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    26   6.9  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.1  
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    25   9.1  

>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = +1

Query: 163 LKMFERTYMMFIDHRRTI---CSATNSTEG---HKEALHSSMSIGEVVSLARGAMVEATY 324
           ++ F RTY      RR I    S T S EG    +E + +S   GE+V L   +   AT+
Sbjct: 258 IRKFIRTYRTKSKTRRFIEDLPSRTISREGFYSEEEEIENSTQNGELVPLMDESTRRATF 317

Query: 325 GTEC 336
           G EC
Sbjct: 318 GVEC 321


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 237 CRICRTTYRSPMIYEHHICSLEHLK--KKANKSLRHASPKAEGSGD 106
           C +C   +RS    E+H  S +H K  +K N+ ++  + +A+ + +
Sbjct: 272 CMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIKKHAKEAQKNAE 317


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = -2

Query: 246 MPF-CRICRTTYRSPMIYE--HHIC 181
           +PF C IC+  YRSP+     HH C
Sbjct: 250 IPFVCLICKKDYRSPIATTCGHHFC 274


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 240 FCRICRTTYRSPMIYEHHICSLEHLKKKANKSLRHASPKAEGSGDE 103
           +C +C+  +    ++E H  S  H   KA K ++ +SP    + +E
Sbjct: 244 YCEVCQKFFGKITVFEAHKKSKAH--NKAVKRMQSSSPSTTSNTNE 287


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 337 RALGEISACCCFQFTLSHALGHAHAEQLSLVAPCHHTHRCA 459
           +AL E++   C      H L  + A ++ L+     TH CA
Sbjct: 12  KALTEVAPVTCQCECWDHNLCSSQASEMDLIYQSQDTHSCA 52


>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 322 YGTECRALGEISACCCFQFTLSHA 393
           +G  CRALG      C+ F L HA
Sbjct: 142 WGVVCRALGLSLERTCYLFLLGHA 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,487
Number of Sequences: 5004
Number of extensions: 45119
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)