Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_N12
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0336 + 24167891-24167982,24168501-24168600,24169216-241693... 35 0.083
02_04_0359 - 22350435-22351040 29 3.1
06_01_1195 + 10280864-10280979,10281024-10281115,10281211-102821... 29 4.1
03_06_0507 + 34404843-34404968,34405091-34405151,34405260-344052... 29 5.4
04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557... 28 7.2
01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711... 28 7.2
05_01_0212 + 1601861-1603600 28 9.5
04_03_0755 + 19310648-19311603,19312420-19312633 28 9.5
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89... 28 9.5
>05_05_0336 +
24167891-24167982,24168501-24168600,24169216-24169375,
24170119-24170566,24171020-24171095,24171204-24171250,
24171345-24171528
Length = 368
Score = 34.7 bits (76), Expect = 0.083
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -2
Query: 252 FLMPFCRICRTTYRSPMIYEHHICSLEHLKKKANKSLRHASPKAEGS 112
F P CRIC T +S ++ H S +H + KA + +P GS
Sbjct: 35 FDQPICRICNVTLKSEALWPAHQVSRKHHEAKAAAAASAKAPSGAGS 81
>02_04_0359 - 22350435-22351040
Length = 201
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +3
Query: 399 PRACGAAESCGAVPPHPSLRGVSLTPNVLCTSQKW 503
PR G+ E PP PSL +TP T W
Sbjct: 88 PRFAGSPEPAREAPPPPSLEAEEVTPKSELTESYW 122
>06_01_1195 +
10280864-10280979,10281024-10281115,10281211-10282156,
10282378-10283075,10283140-10284068
Length = 926
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/78 (23%), Positives = 31/78 (39%)
Frame = +1
Query: 214 ICSATNSTEGHKEALHSSMSIGEVVSLARGAMVEATYGTECRALGEISACCCFQFTLSHA 393
I + +K+A+H + ++ L + E C AL ++S+ C +
Sbjct: 646 ILELVDIARSNKKAVHELGELTQLKKLGVAGVTERNVSYLCEALQKLSSLCSLRVEAKPF 705
Query: 394 LGHAHAEQLSLVAPCHHT 447
G EQL+ P HT
Sbjct: 706 RGLHMLEQLASPPPFLHT 723
>03_06_0507 +
34404843-34404968,34405091-34405151,34405260-34405296,
34405365-34405386,34405861-34405957,34406037-34406180,
34407034-34407173,34408205-34408255,34408347-34408429,
34408515-34408590,34408646-34408760,34409080-34409575,
34409682-34409895,34410000-34410070,34410527-34410695,
34410787-34410916,34411330-34411742,34411839-34412039
Length = 881
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 168 LKKKANKSLRHASPKAEGSGDEGMNVDLD 82
+ +K ++L +S KAE SG+EG +VD D
Sbjct: 363 ISRKVLENLIKSSEKAEPSGNEGSDVDTD 391
>04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,
5579676-5579795,5581616-5581744,5581828-5581953,
5582945-5583000,5583084-5583183,5585155-5585272,
5585374-5585583,5585902-5586226,5587094-5587187,
5588021-5588129,5588246-5588514,5589153-5589280,
5589983-5590217,5590858-5591046,5591326-5591609,
5591698-5591890,5592040-5592207,5592429-5592514,
5594391-5594550
Length = 1412
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -3
Query: 443 WWHGATRLSCSACAWPNAWLNVNWKQQQAL 354
WW G+ S A+P AW W++++ +
Sbjct: 995 WWEGSIHSILSVLAYPCAWSWKQWRRRKKI 1024
>01_06_1061 -
34169469-34169624,34170837-34170938,34171029-34171180,
34172087-34172153,34172239-34172419,34172655-34172778,
34174775-34174871,34175929-34176331,34176729-34176888,
34177412-34177486,34177714-34177892,34178224-34178303,
34178561-34179322
Length = 845
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 410 ACAWPNAWLNVNWKQQQALISPSA 339
ACAWP +W+ W + A+ + A
Sbjct: 194 ACAWPFSWITCRWLKGNAVAAEPA 217
>05_01_0212 + 1601861-1603600
Length = 579
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = +3
Query: 315 GDIRDRMSCARRDQRLLLLPVHVEPRVGPRACGAAESCGAVPPHPSLRGVSLTPNVLCTS 494
GD+ R + A + RLLL V P P+ + S PP P P++
Sbjct: 125 GDLLPRATAAEKAIRLLLKSPAVSPSSSPKKSASPPS----PPPPQEAKKEYPPDLTLPD 180
Query: 495 QKWGIFLCSE 524
K G+F E
Sbjct: 181 LKSGLFSTDE 190
>04_03_0755 + 19310648-19311603,19312420-19312633
Length = 389
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 408 CGAAESCGAVPPHPSLRGVSLTP 476
CG A++ G PP PS RG+ + P
Sbjct: 106 CGGADAAGVAPP-PSPRGMPMAP 127
>04_01_0082 +
897026-897028,897101-897350,898454-898608,898686-898967,
899078-899160,899335-899485,899896-899952,900279-900479
Length = 393
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -2
Query: 240 FCRICRTTYRSPMIYEHHICSLEHLKKKANKSLRHASPKAEGSGDE 103
FC +C Y+ +E H+ S +H +K S + E G+E
Sbjct: 203 FCSLCNKQYKLAHEFESHLSSYDHNHRKDYISDKFTVVTTEVQGNE 248
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,580,479
Number of Sequences: 37544
Number of extensions: 327049
Number of successful extensions: 1090
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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