Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_N11
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580 31 0.79
04_03_0885 + 20552538-20552871,20553162-20553178 30 1.8
06_03_0436 + 20755816-20756025,20756124-20756240,20756942-207571... 29 3.2
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 29 3.2
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290... 29 3.2
09_04_0460 - 17779111-17780184 29 4.2
02_05_1089 + 34019162-34019164,34019249-34019465,34019558-340197... 29 4.2
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 29 5.6
11_06_0577 - 25158833-25162864 28 7.4
06_03_0046 - 15852653-15854560 28 7.4
01_01_0888 + 6990354-6991862,6991970-6992431 28 7.4
07_03_1067 + 23728642-23728690,23728832-23729010 28 9.7
03_05_0850 + 28206166-28206767,28207648-28207891,28208076-282083... 28 9.7
>02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580
Length = 726
Score = 31.5 bits (68), Expect = 0.79
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 115 GDCPVIPPHKAVPXTGPRSRPASDPAGTPDSQ*GTAVGRPPSPG 246
GD IPP +P GP+ P D A PD +G P + G
Sbjct: 516 GDFANIPPEDDLPPAGPQPGPNDDNADDPDDGNIWQLGHPGNQG 559
>04_03_0885 + 20552538-20552871,20553162-20553178
Length = 116
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 115 GDCPVIPPHKAVPXTGPRSRPASDPAGTPDSQ*GTAV 225
G+C PP K P + A DP TP S TAV
Sbjct: 26 GECGATPPDKMALKLAPCASAAKDPKSTPSSGCCTAV 62
>06_03_0436 +
20755816-20756025,20756124-20756240,20756942-20757137,
20757393-20757544,20757653-20757736,20757848-20757925,
20757958-20758116,20758219-20758251,20759119-20759826,
20759917-20759998,20760093-20760449,20760586-20760692,
20760796-20761001,20761480-20761623,20761715-20761800,
20762120-20762283,20762559-20763119
Length = 1147
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 371 LQDTEHRTRDVLETGRERGQIWRQEDLGIE*F 276
L+D++ R RD+ E R QIW Q+++ + F
Sbjct: 539 LEDSKTRVRDLEELLESRSQIWEQKEIRLNQF 570
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +1
Query: 133 PPHKAVPXTGPRSRPASDPAGTPDSQ*GTAVGRPPSP 243
PP P G PAS P TP + + G PSP
Sbjct: 1144 PPSSQSPPPGSSPPPASPPPSTPSAPPTNSSGSAPSP 1180
>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
2907650-2907790,2907870-2908043,2908577-2908851,
2909592-2909755,2910409-2910536,2910628-2910734,
2911747-2911880,2912266-2912441,2912530-2914257,
2915084-2915239,2915328-2915486,2915581-2915751,
2915931-2916047,2916417-2916473,2916565-2916680,
2916790-2916916,2917862-2917945
Length = 2056
Score = 29.5 bits (63), Expect = 3.2
Identities = 21/94 (22%), Positives = 36/94 (38%)
Frame = -2
Query: 472 DRYKDRLTWGDGKYYTSYRVSWRLISLWENNNVIFKILNTEHEMYLKLDVNVDRYGDRKT 293
D KD+ +WG+ S +W + + N + + + V+ D+++
Sbjct: 1725 DSVKDKESWGNVPASPSDS-AWNAAPVSQGNESSDAKQSDSWDGWKSAGVDASTNKDKES 1783
Query: 292 WGSNDSSEKRHTWYLYPVKVGDQQLFLIENREYR 191
WG+ +S W PV GD E E R
Sbjct: 1784 WGNVPASPSDSAWNAAPVSQGDDVWNSAEANESR 1817
>09_04_0460 - 17779111-17780184
Length = 357
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = -2
Query: 316 DRYGDRKTWGSNDSSEKRHTWYLYPVKVGDQQLFLIENREYRQGLKLDANVDRXRGPPCV 137
D +GD + H WY+ V + + + I EYR G+ + C+
Sbjct: 107 DGFGDGDEEAGGGGGDVHHVWYIRTVGLDEATITSIATAEYRAGVGWGGDC-----AVCL 161
Query: 136 GE*RD 122
GE RD
Sbjct: 162 GEFRD 166
>02_05_1089 +
34019162-34019164,34019249-34019465,34019558-34019714,
34019935-34020071,34020387-34020490,34020593-34020688,
34020818-34020908,34021384-34021504,34021579-34021775,
34022605-34022705,34022778-34022833,34023689-34023778,
34023865-34023964,34024194-34024295,34024372-34024441,
34024696-34024850,34024944-34025068,34025126-34025144
Length = 646
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -2
Query: 607 SCGTRATKDIVEDYF---PSEFQLILDQKRIKLIGNHYNQALKLDANVDRYKDRLTWGDG 437
SC D+ + F S+F +K KLI +Q + D ++++ + G
Sbjct: 560 SCLCTLVLDLTTEEFLLSSSDFDSKTLEKLSKLIARSLHQGIP-DDDIEQSNQKQIILSG 618
Query: 436 KYYTSYRVSWR 404
KYYT + ++W+
Sbjct: 619 KYYTLFNINWK 629
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 124 PVIPPHKAVPXTGPRSRP--ASDPAGTPDSQ*GTAVGRPPS 240
PV PP AVP P+ +P A A T +S T PP+
Sbjct: 207 PVAPPGAAVPPAQPQPQPPQAGAEAVTTESTEATQAANPPA 247
>11_06_0577 - 25158833-25162864
Length = 1343
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -1
Query: 458 PPNLGRWKILHQLPSQLATHLSLGKQQRHLQDTEHRTRDVLETGRERGQI 309
PP G W L +P+ L+T + + + + + + R RDV E + G +
Sbjct: 86 PPEPGFWPWLRHVPTWLSTVPTRHRLAKKIHELKDRVRDVGERRQRYGVV 135
>06_03_0046 - 15852653-15854560
Length = 635
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 115 GDCPVIPPHKAVPXTGPRSRPASDPAGTPDSQ*GTAVGRPPSPG 246
GD IPP + +P G + P D A PD +G P + G
Sbjct: 536 GDFADIPPEEDLPPAGLQPGPNEDNADDPDDGNIWQLGHPGNQG 579
>01_01_0888 + 6990354-6991862,6991970-6992431
Length = 656
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 425 QLPSQLATHLSLGKQQRHLQDTEHRTRD 342
+L Q+ THL G+QQ+ Q E R +D
Sbjct: 131 KLEKQITTHLRGGRQQQQQQQPEQRRQD 158
>07_03_1067 + 23728642-23728690,23728832-23729010
Length = 75
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +1
Query: 130 IPPHKAVPXTGPRSRPASDPAGTPDSQ*GTAVGRPPSPG 246
+PP + P P PAG P +Q G PP G
Sbjct: 12 VPPQQGYPGKDGYPPPGYPPAGYPPAQGYPPAGYPPQQG 50
>03_05_0850 +
28206166-28206767,28207648-28207891,28208076-28208389,
28209013-28209067
Length = 404
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 124 PVIPPHKAVPXTGPRSRPASDPAGTPDSQ*GTAVGRPPSPG 246
P +PP + P P S P S + TP + V RPP G
Sbjct: 10 PSLPPSSSSPRISPHSTPVSLTSATP-----SGVHRPPGCG 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,885,059
Number of Sequences: 37544
Number of extensions: 480364
Number of successful extensions: 1715
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1713
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -