Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_N10
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-31... 64 9e-11
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29... 63 2e-10
07_03_1774 + 29425486-29425831,29426018-29426235,29426337-294271... 59 4e-09
03_02_0665 - 10268959-10269148,10269344-10269936,10270572-102710... 58 6e-09
03_02_0840 + 11664382-11664516,11664629-11664737,11665579-116656... 28 9.6
>12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-314584,
314589-315192,315674-315718,316100-316317,317020-317332,
318681-318716
Length = 1054
Score = 64.5 bits (150), Expect = 9e-11
Identities = 44/142 (30%), Positives = 76/142 (53%), Gaps = 2/142 (1%)
Frame = -1
Query: 775 ELYKLAPGFNKLEVFKNGFXQPCPALXRFL*TDCAVDQHLQ*E*V--DIMDRFEVKGEIT 602
ELYK+ G +K+E ++N F A+ F + + ++ + + + DR+ + G IT
Sbjct: 913 ELYKVLGGGHKVEDYRNTFANL--AIPLFSMAEPVPPKTIKHQDMAWTVWDRWTITGNIT 970
Query: 601 LQQFLGHFKNEHKLEITMLSQGVCMLYSFFMPKAKRLERLNLPMSEVVTKVSKKKLEPHV 422
L++ L K E L +S G +LY+ P+ K ERL+ + +V +V+K ++ P+
Sbjct: 971 LRELLDWLK-EKGLNAYSISCGTSLLYNSMFPRHK--ERLDKKVVDVAREVAKVEVPPYR 1027
Query: 421 NALVFELCCNDDDGNDVEVPYV 356
L + C DDD NDV++P V
Sbjct: 1028 RHLDVVVACEDDDDNDVDIPLV 1049
>11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-292513,
295071-295646,295828-296260,296470-297338,297433-298227,
298709-298753,299135-299352,300055-300364,302715-302984
Length = 1331
Score = 63.3 bits (147), Expect = 2e-10
Identities = 43/140 (30%), Positives = 75/140 (53%), Gaps = 2/140 (1%)
Frame = -1
Query: 775 ELYKLAPGFNKLEVFKNGFXQPCPALXRFL*TDCAVDQHLQ*E*V--DIMDRFEVKGEIT 602
ELYK+ G +K+E ++N F A+ F + + ++ + + + DR+ + G IT
Sbjct: 1037 ELYKVLGGGHKVEDYRNTFANL--AIPLFSMAEPVPPKTIKHQDMAWTVWDRWTITGNIT 1094
Query: 601 LQQFLGHFKNEHKLEITMLSQGVCMLYSFFMPKAKRLERLNLPMSEVVTKVSKKKLEPHV 422
L++ L K E L +S G +LY+ P+ K ERL+ + +V +V+K ++ P+
Sbjct: 1095 LRELLDWLK-EKGLNAYSISCGTSLLYNSMFPRHK--ERLDKKVVDVAREVAKVEVPPYR 1151
Query: 421 NALVFELCCNDDDGNDVEVP 362
L + C DDD NDV++P
Sbjct: 1152 RHLDVVVACEDDDDNDVDIP 1171
Score = 37.5 bits (83), Expect = 0.012
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 729 RTXXVNLALPXFGFSEPIAPSTNTYNENKWTLW 631
R NLA+P F +EP+ P T + + WT+W
Sbjct: 1052 RNTFANLAIPLFSMAEPVPPKTIKHQDMAWTVW 1084
>07_03_1774 + 29425486-29425831,29426018-29426235,29426337-29427131,
29427206-29428074,29428317-29428749,29429263-29429859
Length = 1085
Score = 58.8 bits (136), Expect = 4e-09
Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 2/142 (1%)
Frame = -1
Query: 775 ELYKLAPGFNKLEVFKNGFXQPCPALXRFL*TDCAVDQHLQ*E*VD--IMDRFEVKGEIT 602
ELYK+ G + +E ++N F AL F + + ++ + + + DR+ +KG +T
Sbjct: 944 ELYKVIAGEHPIEDYRNTFANL--ALPLFSMAEPVPPKVMKHQDMSWTVWDRWSIKGNLT 1001
Query: 601 LQQFLGHFKNEHKLEITMLSQGVCMLYSFFMPKAKRLERLNLPMSEVVTKVSKKKLEPHV 422
+ + L F ++ L +S G +LY+ + K ERLN + +V +V+K + +
Sbjct: 1002 VAELLQWFSDKG-LTAYSISCGTSLLYNNMFARHK--ERLNKKVVDVAREVAKVDVPEYR 1058
Query: 421 NALVFELCCNDDDGNDVEVPYV 356
L C DDDGND+++P V
Sbjct: 1059 KHLDLVAACEDDDGNDIDIPLV 1080
>03_02_0665 - 10268959-10269148,10269344-10269936,10270572-10271004,
10271172-10272040,10272121-10272915,10273612-10273829,
10274931-10275230,10276834-10277161
Length = 1241
Score = 58.4 bits (135), Expect = 6e-09
Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 3/143 (2%)
Frame = -1
Query: 775 ELYKLAPGFNKLEVFKNGFXQ---PCPALXRFL*TDCAVDQHLQ*E*VDIMDRFEVKGEI 605
ELYK+ G + +E ++N F P ++ L Q ++ I DR+ ++G I
Sbjct: 1038 ELYKVLAGGHPVEDYRNSFANLAIPMFSMAEPLPPKVIKHQDMR---WTIWDRWSIEGNI 1094
Query: 604 TLQQFLGHFKNEHKLEITMLSQGVCMLYSFFMPKAKRLERLNLPMSEVVTKVSKKKLEPH 425
T+ + L + ++ L +S G +LY+ P+ K +R+N + +V +V+K + +
Sbjct: 1095 TVAELL-KWLSDKGLSAYSVSCGTSLLYNTMFPRHK--DRVNKKLVDVAKEVAKVDVPAY 1151
Query: 424 VNALVFELCCNDDDGNDVEVPYV 356
L + C DDDGNDV++P +
Sbjct: 1152 RRHLDVVVACEDDDGNDVDIPLI 1174
>03_02_0840 +
11664382-11664516,11664629-11664737,11665579-11665676,
11665757-11665825,11665921-11666036,11666113-11666167,
11666250-11666370,11666461-11666603,11666691-11666792
Length = 315
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 702 PXFGFSEPIAPSTNTYNENKWTLWTDLKLKERLHYS 595
P G S + Y+ + LW D + KE+LH+S
Sbjct: 32 PLLGKSSSDTGGSEVYDPRRQDLWDDDRKKEQLHWS 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,219,724
Number of Sequences: 37544
Number of extensions: 357356
Number of successful extensions: 845
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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