Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_N09
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    93   3e-20
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    62   9e-11
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    30   0.33 
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    27   3.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.1  
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    26   7.2  

>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 93.5 bits (222), Expect = 3e-20
 Identities = 45/104 (43%), Positives = 69/104 (66%)
 Frame = -1

Query: 715 PXRXDVIFLLNGAEENILQASHGFITQHKWAKSVRAFINIEAXGAGGREVLFQAGPDDPW 536
           P    ++FL N AEE++  ASH FITQ     +++  +N+EA G  G E+LFQA  ++  
Sbjct: 194 PLTHSIVFLFNDAEESLQDASHMFITQSPLRDTIKCVVNLEACGTTGSEILFQATSNE-- 251

Query: 535 IMEVYAAAVPHPFASSLAQELFQSGLIPADTDFRIFRDFGKLSG 404
           +++ Y + VPHPF + LA ++F++GLI +DTDFR F  +G L+G
Sbjct: 252 MIKAY-SHVPHPFGTVLADDVFRTGLILSDTDFRQFVQYGNLTG 294


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 62.1 bits (144), Expect = 9e-11
 Identities = 31/92 (33%), Positives = 55/92 (59%)
 Frame = -1

Query: 703 DVIFLLNGAEENILQASHGFITQHKWAKSVRAFINIEAXGAGGREVLFQAGPDDPWIMEV 524
           D+I  +N AEE+ L  +  F + HK +K+V AF+N+E  G+GG+ +LF++   +  +   
Sbjct: 182 DLIININNAEEDYLFGAKAFAS-HKLSKNVTAFVNLEGAGSGGKAMLFRS--SNGHVSSA 238

Query: 523 YAAAVPHPFASSLAQELFQSGLIPADTDFRIF 428
           Y     +P AS L  + F+ G+I + TD+ ++
Sbjct: 239 YFKGNHYPLASILGNDFFKRGVIRSQTDYIVY 270


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 447 SAGMRPLWNSSCASDDAKGCGTAAAYTSMIQGSSGPAWNSTSRPPA 584
           S G+RP   S+    +       A   ++  GS  PAWN+ SR PA
Sbjct: 793 SRGIRPGSISTADGPNVPNWAQGARTPAVANGSRTPAWNTGSRTPA 838


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 100 GAEPSRCLPKIPSICSTSNVPCLGSSAYLL 189
           G E    LPK P   + SN P L SS ++L
Sbjct: 365 GNEAYMALPKGPLTTTASNTPALASSGHVL 394


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 543 SSGPAWNSTSRPPAPXASMLMKA 611
           S  PA NSTS+PP P  S  + A
Sbjct: 279 SMNPAINSTSKPPLPPPSSRVSA 301


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 718 HPXRXDVIFLLNGAEENILQASHGFITQHKW 626
           H    D++ + +G E NIL+   G +  + W
Sbjct: 276 HTKASDIVQIASGTEHNILRTKKGSVLIYGW 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,591
Number of Sequences: 5004
Number of extensions: 43090
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)