Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_N09
(802 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1214 - 11583510-11583653,11585063-11585148,11585234-115853... 105 5e-23
04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996... 72 6e-13
06_01_0620 + 4508722-4508875,4509566-4509830,4510092-4510230 32 0.61
12_02_0744 - 22704637-22705341 31 1.1
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85... 31 1.4
01_06_1842 - 40278875-40280131 31 1.4
08_01_0571 - 5088060-5088314,5088826-5088868,5088911-5089137 30 2.5
08_02_0574 - 18867623-18868033,18869751-18870209 29 5.7
02_04_0328 + 22076321-22077835 29 5.7
01_06_1790 - 39888313-39888350,39888437-39888530,39888612-398888... 29 5.7
12_01_0119 + 905916-907277,907737-907774,908269-908492,909411-90... 28 7.5
05_03_0545 - 15244647-15245147,15245342-15245635 28 7.5
05_04_0014 + 17171565-17172102,17172927-17173093 28 9.9
>07_01_1214 -
11583510-11583653,11585063-11585148,11585234-11585316,
11585415-11585572,11587083-11587243,11588058-11588279,
11588553-11588677,11589538-11589656,11589961-11590020,
11590292-11590370,11591936-11592100,11592632-11592660,
11593439-11593500,11594724-11594859,11594999-11595161,
11595245-11595384,11597811-11597899,11598914-11599001,
11599558-11599658,11599711-11599859,11600769-11600870,
11601888-11601973,11602064-11602309
Length = 930
Score = 105 bits (251), Expect = 5e-23
Identities = 49/93 (52%), Positives = 65/93 (69%)
Frame = -1
Query: 700 VIFLLNGAEENILQASHGFITQHKWAKSVRAFINIEAXGAGGREVLFQAGPDDPWIMEVY 521
VIFL NGAEE L SHGFI HKW ++ AFINIEA G+GG +++ Q+GP W +Y
Sbjct: 215 VIFLFNGAEELFLLGSHGFIKTHKWNNTIGAFINIEASGSGGADLVCQSGPGS-WPSRIY 273
Query: 520 AAAVPHPFASSLAQELFQSGLIPADTDFRIFRD 422
A +P A+S+AQ++F G+IP DTD+RIF +
Sbjct: 274 AQTAKYPMANSVAQDMF--GIIPGDTDYRIFAE 304
>04_04_0529 -
25997736-25998055,25998441-25998804,25999563-25999675,
25999880-25999989,26000155-26000311,26000390-26000915,
26001101-26001265,26002470-26002589,26003022-26003093,
26003422-26003499,26003965-26004057,26004491-26004647,
26005351-26005589,26006907-26007050,26007637-26007666,
26010610-26010993,26011486-26011554,26012353-26012418,
26013166-26013255,26013583-26013628,26014318-26014419,
26014552-26014694
Length = 1195
Score = 71.7 bits (168), Expect = 6e-13
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 5/104 (4%)
Frame = -1
Query: 700 VIFLLNGAEENILQASHGFIT-----QHKWAKSVRAFINIEAXGAGGREVLFQAGPDDPW 536
V+++ E +L + G + +H+W SVR I++EA G G+ LFQ D W
Sbjct: 495 VVYISTSFEYPLLHGNGGLVVFTVQHRHRWRNSVRFAIDLEAMGISGKSTLFQG--TDHW 552
Query: 535 IMEVYAAAVPHPFASSLAQELFQSGLIPADTDFRIFRDFGKLSG 404
+E +A+ +P A +Q++FQSG I + TDF+I+++ G L G
Sbjct: 553 ALESFASVAKYPSAQIASQDVFQSGAIKSATDFQIYQEVGGLPG 596
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/85 (28%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Frame = -1
Query: 718 HPXRXDVIFLLNGAEENILQASHGFITQH-KWAKSVRAFINIEAXGAGGREVLFQAGPDD 542
H + V+FL N EE L +H FITQ W + G V+F
Sbjct: 463 HGFKSGVLFLFNTGEEEGLDGAHSFITQEWGWVVYISTSFEYPLLHGNGGLVVFTVQHRH 522
Query: 541 PWIMEVYAAAVPHPFASSLAQELFQ 467
W V A S LFQ
Sbjct: 523 RWRNSVRFAIDLEAMGISGKSTLFQ 547
>06_01_0620 + 4508722-4508875,4509566-4509830,4510092-4510230
Length = 185
Score = 31.9 bits (69), Expect = 0.61
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -3
Query: 536 DHGGVRGRRPAPLRVVAGAGAVPERPHP 453
D GVRGRRPA + G A PHP
Sbjct: 15 DGDGVRGRRPAAPDLARGVAAATANPHP 42
>12_02_0744 - 22704637-22705341
Length = 234
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 462 PLWNSSCASDDAKGCGTAAAYTSMIQGSSGPAWNSTSRPPAP 587
PLW SS A D A G G ++ + S+ +++S S PP+P
Sbjct: 129 PLWKSSSAEDIAAGAGDG----NLDEKSNSNSYSSPSPPPSP 166
>11_01_0110 +
850780-850805,851465-851537,851558-851720,851947-852260,
852330-852409,852506-852848,853068-853166,853240-853360,
853567-853723,853976-854099,855275-855368,855866-857259,
857882-857924,858240-858458,859379-859605,859701-859948,
860246-860552,860725-861153
Length = 1486
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 96 TRSRAKPLPTENTIHLFDK*CALPWF 173
TR+RAK LP +HL+ C LPWF
Sbjct: 885 TRARAKQLPC---MHLYHSSCILPWF 907
>01_06_1842 - 40278875-40280131
Length = 418
Score = 30.7 bits (66), Expect = 1.4
Identities = 26/84 (30%), Positives = 35/84 (41%)
Frame = +3
Query: 444 VSAGMRPLWNSSCASDDAKGCGTAAAYTSMIQGSSGPAWNSTSRPPAPXASMLMKARTDL 623
++ + P S A A G GTAAA ++ + S P N + A+ A T
Sbjct: 168 ININIWPFSRSRSAGHSAAGAGTAAAGAALSRNKSNPNANVNANASNNAAAAAAAAATAP 227
Query: 624 AHLCCVMKPCXACRMFSSAPLSRN 695
A P A R SSAP SR+
Sbjct: 228 A-AATAPGPAPA-RKVSSAPCSRS 249
>08_01_0571 - 5088060-5088314,5088826-5088868,5088911-5089137
Length = 174
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 560 EQHLAPARAXRLNVDEGAHRLGPFVLRDEAVRXLQNVLLG 679
+QHL A +D+G L + + DE+ L VLLG
Sbjct: 131 QQHLVDVSAGSKQLDDGGSTLADYDIHDESTLHLVQVLLG 170
>08_02_0574 - 18867623-18868033,18869751-18870209
Length = 289
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 100 GAEPSRCLPKIPSICSTSNVPCLGSSAYLLTP 195
G PS CLP+ + + +PC GSS P
Sbjct: 69 GFVPSLCLPRAAGSVTPAAIPCAGSSTTASAP 100
>02_04_0328 + 22076321-22077835
Length = 504
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -3
Query: 512 RPAPLRVV--AGAGAVPERPHPGGHRLQDIQGLREALRSIPTSVVRH 378
R P+ ++ A AG P+ G HRLQDIQ L S+ +++++H
Sbjct: 193 RAGPMALIGPAAAGDSPQAGGGGLHRLQDIQD--STLGSVLSALIQH 237
>01_06_1790 -
39888313-39888350,39888437-39888530,39888612-39888836,
39888944-39889018,39889144-39889212,39889319-39889384,
39889492-39889713,39889794-39890681,39890973-39891053,
39892546-39892598,39893010-39893088,39893218-39893319
Length = 663
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 417 PKSLNILKSVSAGMR--PLWNSSCASDDAKGCGTAAAYTSMIQGSSGPAWNSTSRPPAP 587
P S + K S+G R S+ A+++ G G AA S G +S+S+PP P
Sbjct: 394 PMSTSAAKEDSSGKRCKSTEESNAAAEENSGKGKAAQSNSENGGGKKQGKDSSSKPPEP 452
>12_01_0119 +
905916-907277,907737-907774,908269-908492,909411-909637,
909733-909980,910275-910557,910707-911135
Length = 936
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 96 TRSRAKPLPTENTIHLFDK*CALPW 170
TR+RAK LP +HL+ C LPW
Sbjct: 343 TRARAKQLPC---MHLYHSSCILPW 364
>05_03_0545 - 15244647-15245147,15245342-15245635
Length = 264
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -3
Query: 521 RGRRPAPLRVVAGAGAVPERP 459
RGR P + VV GA AVPERP
Sbjct: 239 RGRHPNRI-VVTGANAVPERP 258
>05_04_0014 + 17171565-17172102,17172927-17173093
Length = 234
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 462 PLWNSSCASDDAKGCGTAAAYTSMIQGSSGPAWNSTSR 575
P+W+SS +S G G S SG W+S ++
Sbjct: 181 PVWHSSSSSSTPPGAGAQPNSFSSTNTGSGVGWSSLTK 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,643,425
Number of Sequences: 37544
Number of extensions: 355565
Number of successful extensions: 1176
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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