Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_N03
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    53   5e-08
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    27   3.0  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    27   3.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   7.0  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   9.2  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 23/40 (57%), Positives = 34/40 (85%)
 Frame = -1

Query: 658 DNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAAL 539
           +NASK+AG+MI+K ++ +NR RQA IT ELI+I++GA +L
Sbjct: 261 ENASKSAGDMINKFSIQYNRQRQASITNELIDIVTGANSL 300


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 563 LDELPGDDSLTGPVEREGQLVDH 631
           LDELP    +TGP  +  +L+DH
Sbjct: 687 LDELPAPQVITGPRIQPTKLIDH 709


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +3

Query: 48  TLFLTTTAPTHRSQRAARHMLKPVSFRVSVAGMGAVQCRHRKSY 179
           T F  T AP H S  A +H   PV+       +  +Q  H   +
Sbjct: 399 TPFSPTLAPQHTSSNATKHSAPPVTKSAPFPVVSPLQLNHTPGF 442


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 71   AHTQVTARSPTYVEASLVSRECCRDGSCPV 160
            +H ++ A  P+YV    +S E C++   P+
Sbjct: 3363 SHMRIIADKPSYVTMQTISDEYCKNRGMPL 3392


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 385 ESCHRKTCLLFFIENVFKTFIIETSDH 305
           ES  +   LLF +E  F+++  ++SDH
Sbjct: 455 ESLFKMNALLFILEQGFESWFRDSSDH 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,599
Number of Sequences: 5004
Number of extensions: 39462
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)