Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_N01
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    28   1.7  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    26   5.2  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    26   5.2  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    26   6.9  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   6.9  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   9.1  

>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
 Frame = +1

Query: 424 GKRREVVPFGCRWGR-CS-----NSIRV*VNFYAIEEFKVKTPTRHTQYT 555
           G + ++ PFG  W R CS     NS++  V F+A +  K      H   T
Sbjct: 53  GTKAKLPPFGLEWYRGCSTVIVGNSLKAAVRFFAFDSIKKSLSDEHGHLT 102


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 363 RYPKHRSPSSPDPSLATKGASKLTHRHN 280
           + PKH  PSSP P  +  G S L+   N
Sbjct: 270 KMPKHSLPSSPTPFNSNSGDSLLSRIKN 297


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
 Frame = +2

Query: 143 SQDTVMAELDSKAVCLVRASKNSA----KQNLPPNRKRDPLRRSGEKLSGLCLWVNLLAP 310
           S    +AEL    +   R    S     K NLP + +      + EK +  C+W+N +  
Sbjct: 66  SSSKTLAELSKGELAKAREDLKSVLSFLKNNLPVDTESSSEAFTIEKDNNSCVWLNSVKS 125

Query: 311 FVASDGSGDDG 343
           FV    S   G
Sbjct: 126 FVEKQFSYSSG 136


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 543 VPSGSFNFKFFYRVKVNSNSYGVGTAP-PAATEGNNFPSFSAK*RSYTCHYGSYRSINGD 367
           +P  S + K       + N Y + T   P  +  NN    + + +++   + +Y ++NGD
Sbjct: 262 IPFASASPKIKAAFPFDPNVYALNTNDGPVTSTDNNCDQLNTRMQAWNNGF-NYSNLNGD 320

Query: 366 FRYP 355
            +YP
Sbjct: 321 IQYP 324


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -3

Query: 504 VKVNSNSYGVGTAPPAATEGNNFPSFSAK*RSYTCHYGSYRSINGDFRYPKHRSPSSPDP 325
           VK+ SN   +   PP   +  +FP+      S T    S+   N   + P ++S SS +P
Sbjct: 40  VKIESNRVSL---PPLKIQKGSFPAIRQPTESSTHFQSSHSVSNAHNQSPLNQSQSSANP 96


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 357 PKHRSPSSPDPSLATK 310
           P+ RSPSSP P LA K
Sbjct: 315 PRKRSPSSPVPLLAKK 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,054
Number of Sequences: 5004
Number of extensions: 52527
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)