Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_N01
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119...    33   0.19 
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497...    31   1.0  
02_05_1033 + 33642479-33642688,33643089-33643343,33643479-336436...    31   1.3  
01_07_0279 + 42449197-42449310,42449398-42449835                       29   4.1  
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047...    28   9.5  
10_08_0352 + 17091637-17091945,17092049-17096617,17096975-170971...    28   9.5  
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581...    28   9.5  

>03_03_0042 +
           14009649-14009866,14011342-14011419,14011791-14011955,
           14012071-14012138,14012219-14012258,14013579-14013690,
           14013859-14013942
          Length = 254

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 23/56 (41%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = -3

Query: 414 RSYTCHYGSYRSINGDFR--YPKHRSPSSPDPSLATKGASKLTHRHNPLSFSPDLL 253
           RS    Y SY       R  Y  HR   SP  SL+  G  K  HR N  S SPD L
Sbjct: 169 RSPRSRYHSYSPSPSPARRDYRDHRDDYSPGESLSPHGQDKRHHRSNGRSASPDEL 224


>09_04_0695 -
           19547101-19548010,19548089-19548587,19549461-19549728,
           19551025-19551687,19551849-19552060,19552203-19552593,
           19552659-19553107,19553454-19553790
          Length = 1242

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = -3

Query: 477 VGTAPPAATEGNNFPSFSAK*RSYTCHYGSYRSINGDFRYPKHRSPSSPDPSLATKGASK 298
           + + PPAA  G + P+ ++   S     GS   ++ DF        S P P+    G + 
Sbjct: 21  LNSPPPAAPAGASSPAATSAQCSSGSSSGSQEKVDWDFSDDDEVVESPPSPARQMAGQAS 80

Query: 297 LTHRHNPLS 271
             H   PL+
Sbjct: 81  AAHEATPLA 89


>02_05_1033 +
           33642479-33642688,33643089-33643343,33643479-33643603,
           33643827-33643908,33644008-33644076,33644102-33644341,
           33644431-33644496,33645087-33645155,33645229-33645366,
           33645681-33645754,33646146-33646255,33646428-33646525,
           33646595-33646633,33646771-33646890,33646984-33647109,
           33647321-33647382,33647467-33647518,33648182-33648436
          Length = 729

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -1

Query: 527 LTLNSSIA*KLTQTRMELEQRPQRQPKGTTSLRFPLNREVIHVITDPTDPLTVILGTPST 348
           LT+   I   L Q  +E + +PQ  P  T S +  ++     VI +PT  L      P  
Sbjct: 660 LTIGGHIYDTLVQLELESQPKPQTSPTSTLSYKLYVHTAEASVIGEPTSLLVSPCVVPPA 719

Query: 347 G 345
           G
Sbjct: 720 G 720


>01_07_0279 + 42449197-42449310,42449398-42449835
          Length = 183

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -3

Query: 552 ILCVPSGSFNFKFFYRVKVNSNSYGV-GTAPPAATEGNNFPSFSAK*RSYTCHY 394
           I+  P+ +   K  +R+    N YG  G+APP    G + P+ S+  R    HY
Sbjct: 130 IMSKPTTTRKVKIVHRMIRPPNQYGAAGSAPPPTAGGGHQPATSSYLRPIYYHY 183


>12_02_0228 +
           15903452-15903812,15904153-15904202,15904615-15904713,
           15907146-15907415,15908045-15908125,15909033-15909599,
           15909677-15910053,15910326-15911613
          Length = 1030

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -3

Query: 345 SPSSPDPSLATKGASKLTHRHNPLSFSPDLLSGSRFRFGGR 223
           S SS + SLA +  SK      P SFSP   S S F   G+
Sbjct: 761 SQSSSESSLAGQDKSKAASSSAPFSFSPQFGSTSPFAGQGK 801


>10_08_0352 + 17091637-17091945,17092049-17096617,17096975-17097187,
            17097266-17097494,17097857-17097981
          Length = 1814

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 342  PSSPDPSLATKGASKLTHRHNPLSFSPDLLSGSR 241
            P +  P  ATK  SK T  H   + SPD L+ SR
Sbjct: 1274 PETVKPMKATKNNSKATDYHGTENKSPDSLACSR 1307


>01_06_0575 -
           30357556-30357582,30357698-30357944,30358039-30358161,
           30358275-30358301,30358475-30358633,30359764-30359948,
           30360225-30360293,30360432-30362354,30363018-30363339,
           30363506-30363543
          Length = 1039

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 176 KAVCLVRASKNSAKQNLPPNRKRDPLRRSGEKLSGLCL 289
           K++C++R   N  K+NLP + + D L  +G  +   CL
Sbjct: 324 KSICILR---NDVKKNLPSSAEFDGLNHNGINMVKTCL 358


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,070,809
Number of Sequences: 37544
Number of extensions: 340607
Number of successful extensions: 957
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)