Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_N01
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug resis...    29   2.8  
U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug resis...    29   2.8  
AC006696-9|AAF39992.1|  111|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF016446-5|AAC24163.1|  329|Caenorhabditis elegans Serpentine re...    28   6.4  
Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical p...    28   8.5  
Z68341-2|CAA92765.2|  649|Caenorhabditis elegans Hypothetical pr...    28   8.5  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    28   8.5  
AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase...    28   8.5  

>U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug
           resistance related protein2 protein.
          Length = 1525

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 249 GSRFRFGGRFCLALFLLARTKHTAFESSSAITVSWL 142
           G   +FGG  CLAL L    K+    +S  IT+ WL
Sbjct: 111 GDLVQFGG-ICLALILTVACKNKGIITSGVITLYWL 145


>U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 2 protein.
          Length = 1525

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 249 GSRFRFGGRFCLALFLLARTKHTAFESSSAITVSWL 142
           G   +FGG  CLAL L    K+    +S  IT+ WL
Sbjct: 111 GDLVQFGG-ICLALILTVACKNKGIITSGVITLYWL 145


>AC006696-9|AAF39992.1|  111|Caenorhabditis elegans Hypothetical
           protein W08E12.9 protein.
          Length = 111

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/69 (21%), Positives = 29/69 (42%)
 Frame = +1

Query: 514 EFKVKTPTRHTQYTNMFXKFEEIFLFLAFTIPTKAVERFYFMLWLXHYLKTXLQXLEASK 693
           +F V  PT        F KF +    +++T+ T    +FY+     +Y  +  +  +  K
Sbjct: 6   DFSVLVPTPAASAAKFFPKFFQKVSIISYTVETLIFSKFYYKTQYENYATSPKKRKKEIK 65

Query: 694 YXKQXQXIS 720
             K  Q ++
Sbjct: 66  NKKVVQILT 74


>AF016446-5|AAC24163.1|  329|Caenorhabditis elegans Serpentine
           receptor, class h protein22 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 561 HISILCVPSGSFNFKFFYRVKVNSNSYG 478
           H  ++ VP+G FN+ FF+  +  S +YG
Sbjct: 249 HSIMMGVPNGMFNYAFFFGYENESLAYG 276


>Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical
           protein T04A11.6 protein.
          Length = 988

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 633 IKTFNGFRRYRERQKQKYFLKLXEHISILCVPSGS 529
           +K+  GF ++R RQKQ     L  H + + +P+G+
Sbjct: 239 LKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGA 273


>Z68341-2|CAA92765.2|  649|Caenorhabditis elegans Hypothetical
           protein F01G4.4 protein.
          Length = 649

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 480 GVGTAPPAATEGNNFPSFSAK 418
           G+ TAP AA   NNFP+F+ +
Sbjct: 486 GLTTAPAAAPNQNNFPTFATQ 506


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
           potassium channelsprotein 2 protein.
          Length = 1564

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 354 KHRSPSSPDPSLATKGASKLTHRHNPLSFSPDLLSGSRFRFGGRFCL 214
           +++  +SP+P L  K   ++  + NPL  S D L+ S  RF    C+
Sbjct: 625 ENKISTSPEPVLKRKNKERIARQQNPL-HSFDWLNVSPRRFRPELCI 670


>AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase
           protein.
          Length = 988

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 633 IKTFNGFRRYRERQKQKYFLKLXEHISILCVPSGS 529
           +K+  GF ++R RQKQ     L  H + + +P+G+
Sbjct: 239 LKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGA 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,776,250
Number of Sequences: 27780
Number of extensions: 293741
Number of successful extensions: 743
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)