Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_M24
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.3  
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    26   7.1  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   7.1  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    25   9.4  

>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
 Frame = +1

Query: 235 SSRVGTPITTLSEVASLSIPSQ*RFPSG*AGEMALTKATF--RCSIGSYFMS*RMYPPHF 408
           S+    P ++ S  AS S+ S    PS  +  ++ + AT     S  S   S     P  
Sbjct: 17  SASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPAS 76

Query: 409 SSFLISL*NQSTKSASR*RFGPTAW*TSHLVSSSRAAFT 525
           SSF+ SL + S++ +S      T+  ++ L SSS A+ T
Sbjct: 77  SSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPT 115


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 328 HQLIHSEIFTGKELKGKLLQIMW*SACPPLRIWASP*RTWKTRFRG 191
           HQL  SEI TG+E +  +  +        L + A   +TWK R +G
Sbjct: 261 HQLSDSEIITGEEEEESIFSVR-----ARLYVVADEKKTWKERGQG 301


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 590  LYKNGLATVKQPVFVSDVAQGI 525
            L K GL++ K P+FVS + +G+
Sbjct: 1016 LGKLGLSSSKSPIFVSSILEGL 1037


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 698 YSSLTAHSPKXWLIFQADGFFRTKGSGC 781
           Y+SLT+   K W      GFFR  G+ C
Sbjct: 56  YTSLTSTLVKIWNREGLIGFFRGNGTNC 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,417,928
Number of Sequences: 5004
Number of extensions: 75272
Number of successful extensions: 195
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)