Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_M24
(793 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336... 47 1e-05
02_05_1108 - 34166672-34166695,34166864-34166932,34167031-341671... 40 0.002
02_05_1103 - 34136955-34136978,34137147-34137215,34137314-341374... 40 0.002
02_05_1100 - 34108581-34108584,34109646-34109701,34110470-341105... 40 0.002
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 32 0.45
03_01_0593 + 4379263-4379377,4380359-4380491,4380585-4380656,438... 32 0.60
02_04_0592 - 24171698-24172285 30 1.8
07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,411... 29 4.2
11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260... 28 7.4
07_03_1284 + 25463476-25463557,25465088-25465220,25465307-254653... 28 7.4
>02_05_1223 +
35033273-35033353,35033455-35033539,35033613-35033683,
35034400-35034531,35034654-35034769,35035128-35035251,
35035349-35035417,35035508-35035628,35035707-35035843
Length = 311
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = -3
Query: 596 MPLYKNGLATVKQPVFVSDVAQGIVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLM 420
+PL +G +T QPV+V DVA IVN+ +DD T + Y+ GP+ Y + +L + Y+ +
Sbjct: 153 LPLVDSG-STKIQPVYVVDVAAAIVNSLKDDGTSMGKTYELGGPEIYTVHELAELMYETI 211
Query: 419 RKDEKWGGYI 390
R +W YI
Sbjct: 212 R---EWPRYI 218
>02_05_1108 -
34166672-34166695,34166864-34166932,34167031-34167154,
34167192-34167256,34167726-34167854,34168473-34168547,
34171613-34171777,34171864-34172063,34172866-34172963,
34173719-34173819,34173915-34174040
Length = 391
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = -3
Query: 560 QPVFVSDVAQGIVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGYI 390
QPV+V DVA IVN+ +DD T + Y GP+ Y + DL + Y+ + +W YI
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGTSMGKSYGLGGPEIYTVHDLAELMYETIC---EWPRYI 376
>02_05_1103 -
34136955-34136978,34137147-34137215,34137314-34137437,
34137475-34137539,34138009-34138137,34138756-34138830,
34141896-34142060,34142147-34142346,34143149-34143246,
34144002-34144102,34144198-34144323
Length = 391
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = -3
Query: 560 QPVFVSDVAQGIVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGYI 390
QPV+V DVA IVN+ +DD T + Y GP+ Y + DL + Y+ + +W YI
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGTSMGKSYGLGGPEIYTVHDLAELMYETIC---EWPRYI 376
>02_05_1100 -
34108581-34108584,34109646-34109701,34110470-34110509,
34110955-34111066,34111690-34111767,34112004-34112088,
34112596-34112664,34112763-34112886,34112924-34112988,
34113458-34113586,34114205-34114279,34117344-34117508,
34117595-34117794,34118597-34118694,34119450-34119550,
34119649-34119774
Length = 508
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = -3
Query: 560 QPVFVSDVAQGIVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGYI 390
QPV+V DVA IVN+ +DD T + Y GP+ Y + DL + Y+ + +W YI
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGTSMGKSYGLGGPEIYTVHDLAELMYETIC---EWPRYI 376
>02_03_0300 + 17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 32.3 bits (70), Expect = 0.45
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +2
Query: 545 TQTQAVSQSLIRFYR--GASGCCEIGILLTNDLKKS 646
T T S SL++F + G+SGC ++ +L T+DL K+
Sbjct: 967 TYTMGSSSSLVKFTQEVGSSGCHQVSVLPTSDLNKA 1002
>03_01_0593 +
4379263-4379377,4380359-4380491,4380585-4380656,
4380739-4380813,4380896-4380967,4381055-4381126,
4381251-4381322,4381403-4381468,4381547-4381612,
4381689-4381978,4382072-4382355,4382690-4382961,
4383411-4383546,4383840-4383970,4384078-4384234,
4384334-4384477
Length = 718
Score = 31.9 bits (69), Expect = 0.60
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = -3
Query: 266 NVVIGVPTLEDLGVTLTHMEDQVPWELKPFRAHQYYMDRLGEFPKPDPPPVYSA 105
NV+ +P L+DL V H +P +LK Q + P P PPP YSA
Sbjct: 216 NVLANLP-LDDLNVANNHFTGWIPSQLKKINNLQTDGNSWSNGPAPPPPP-YSA 267
>02_04_0592 - 24171698-24172285
Length = 195
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = -3
Query: 260 VIGVPTLEDLGVTL--THMEDQVPWEL-KPFRAHQYYMDRLGEFPKPDPPPVYSA*IVFI 90
++G P +DL + T M+D+V L + + Y +++L + P+ DPPP A
Sbjct: 124 LVGEPRRKDLWILCRQTSMDDEVYGRLLEKAKEEGYDVEKLRKTPQDDPPPESDAAPTDT 183
Query: 89 NNSYLLDKLYGR 54
++ L+G+
Sbjct: 184 KGTWWFKSLFGK 195
>07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,
4110567-4110621,4111046-4111143,4112259-4112417,
4112518-4112577,4113436-4113624,4113749-4113802,
4113959-4114045,4114149-4114881,4115282-4115373,
4115739-4115812,4116097-4116199,4116342-4117204,
4117649-4117724,4117861-4117972,4118092-4118168,
4118272-4118352,4118710-4118789,4118860-4118875
Length = 1059
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 608 HSNLMPLYKNGLATVKQPVFVSDVAQGIVNAARDDDTKCEVYQAVG 471
H+ + PLYK ++ P+F+S + + V TK +Y+A G
Sbjct: 881 HARIKPLYKQRFFSILMPIFLSKIKESTVMT-----TKLVLYRAFG 921
>11_05_0081 -
18924353-18924462,18925068-18925187,18925569-18926086,
18927392-18927471,18927680-18927782,18928084-18928295,
18928392-18929210,18929331-18929444,18929935-18929983,
18930115-18930271,18930354-18930807,18930938-18931147
Length = 981
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +3
Query: 114 NWWRVWFRELSKPIHVVLMGAKRFQFPRNLVFHVRQGDAQILKGG 248
NW RVW L I L K Q+ VFHV + KGG
Sbjct: 385 NWRRVWVLLLWLAICAGLFTYKFIQYRHRAVFHVMGYCVCVAKGG 429
>07_03_1284 +
25463476-25463557,25465088-25465220,25465307-25465378,
25465476-25465544,25465629-25465700,25465792-25465860,
25466155-25466220,25466299-25466364,25466452-25466786,
25466931-25467214,25467796-25468067,25468152-25468287,
25468625-25468755,25468890-25469046,25469185-25469327,
25470105-25470190,25471530-25472962,25474563-25474712,
25475221-25475322,25475467-25475568
Length = 1319
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = -3
Query: 266 NVVIGVPTLEDLGVTLTHMEDQVPWELKPFRAHQYYMDRLGEFPKPDPPPVYS 108
+V+ +P L DL V +P +LK + Q + G P P PPP S
Sbjct: 178 DVLADLP-LTDLNVANNQFTGWIPDKLKKIKNLQTNGNSFGSGPSPPPPPYQS 229
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,612,187
Number of Sequences: 37544
Number of extensions: 521727
Number of successful extensions: 1221
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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