Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_M24
         (793 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical ...    71   1e-12
U80029-10|AAB37589.1|  460|Caenorhabditis elegans Hypothetical p...    34   0.10 
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ...    30   1.7  

>AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.2 protein.
          Length = 431

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 52/161 (32%), Positives = 74/161 (45%), Gaps = 4/161 (2%)
 Frame = -3

Query: 590 LYKNGLATVKQPVFVSDVAQGIVNAARDDDTKCEVYQAVGPKRYLLADLVDWFYKLMRKD 411
           LYK G  T K P++V DVA GI +A  D   K   Y+ VGP  Y L++L+D+ YK     
Sbjct: 244 LYKKGEETYKMPIWVGDVAAGIQSAVNDPTAKGHTYEFVGPHCYQLSELIDFMYKKAHCL 303

Query: 410 EKWG-GYIRYDM--KYDPILHLKVALVNAISPAYPLGNLHWEGIEREATSDNVVIGVPTL 240
             +G  Y R+ M   Y   L +   L   +       N  W  +E      +++ G  TL
Sbjct: 304 SDFGFRYKRHGMPDPYFMALTMATELYGKVFKCKVPLNREW--MEFVEVQSDILTGERTL 361

Query: 239 EDLGV-TLTHMEDQVPWELKPFRAHQYYMDRLGEFPKPDPP 120
            DLGV  LT  E     +      ++Y+ ++ GE P P  P
Sbjct: 362 ADLGVRRLTEFELAGGQQAFYRSFNRYFEEQYGELPAPSLP 402



 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/20 (70%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = -2

Query: 726 LGECAVREEYPTAT-IXPSI 670
           LGE AVREE+P AT I PS+
Sbjct: 199 LGEVAVREEFPEATIIRPSV 218


>U80029-10|AAB37589.1|  460|Caenorhabditis elegans Hypothetical
           protein T20D4.8 protein.
          Length = 460

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
 Frame = -3

Query: 401 GGYIRYDMKYDP----ILHLKVALVNAISPAYP-LGNLHWEGIEREATSDNVVIGVPTLE 237
           G YI  D   DP    I +LK+ L+N  +  +     +H E +++E  S+     + TLE
Sbjct: 68  GTYITLDQILDPDSLMIWYLKIELLNTTTADFDYFFKMHSEYVKKENKSEKFSFVMETLE 127

Query: 236 DLGVTLTHM 210
           ++ VTLT++
Sbjct: 128 NVNVTLTNI 136


>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
           protein Y76B12C.2 protein.
          Length = 1119

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 201 GSVGTETFSRPSVLHGSAWRVPETRPSTSLLSLNCF 94
           G V   +  + S+L G   R PETR  T+L+   CF
Sbjct: 590 GVVSVASIEQDSLLEGHEARYPETRRLTALVDAKCF 625


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,833,779
Number of Sequences: 27780
Number of extensions: 425632
Number of successful extensions: 937
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)