Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_M24
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    27   0.26 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    26   0.35 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.9  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    23   3.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   3.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   7.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.9  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
 Frame = -3

Query: 449 DLVDWFYKLMRKDEKWGGYIRYDMKYDPILHLKVALVNAISPAYPLGNLHWEG--IEREA 276
           DL+   Y+ +    + G +    + ++   H    L+    P   +  L W    I REA
Sbjct: 213 DLMGSPYRNLTFVRREGEFSVLQVSFNLQRHTGYFLIQVYVPCVLIVVLSWVSFWIHREA 272

Query: 275 TSDNVVIGVPTLEDLGVTLTHMEDQVP 195
           TSD V +G+ T+  L          +P
Sbjct: 273 TSDRVGLGITTVLTLSTISLDSRTDLP 299



 Score = 25.0 bits (52), Expect = 0.81
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 199 TWSSMCVKVTPKSSRVGTPITTLSEVASLSIPSQ*RFP 312
           +W S  +     S RVG  ITT+  ++++S+ S+   P
Sbjct: 262 SWVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLP 299


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 359 HLKVALVNAISPAYPLGNLHWEG--IEREATSDNVVIGVPTL 240
           H+   L+    P   L  L W    + REAT+D V +G+ T+
Sbjct: 212 HMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTV 253


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 470  PKRYLLADLVDWFYKLMRKDEKW--GGYIRYDMKYDPILHLK 351
            P  YLL D +   Y   RK+  W  G ++  ++ Y+  +H K
Sbjct: 977  PTEYLLEDSMKQQYGKRRKEPPWLEGVHVTPELIYEYQIHPK 1018


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 311 GNLHWEGIEREATSD 267
           G + WEG+E+E   D
Sbjct: 100 GGIFWEGLEKEVGDD 114


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 95  KQFKLSKLVEGLVSGTLQADP 157
           K F L  +V  L+SG  Q DP
Sbjct: 108 KMFILPLIVSSLISGMAQLDP 128


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 547 CRTSLRVS*TPRATTTLNVKSTKPLGQNATYLPI 446
           C T+ +       TTT+N  +T  +  + T +PI
Sbjct: 823 CVTTEQSVVVTNVTTTINTPTTSVISMSGTTVPI 856


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 237 GFGRHLDAHGRPG 199
           G+GRHL  H + G
Sbjct: 209 GYGRHLPGHAQMG 221


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -3

Query: 254 GVPTLEDLG 228
           GVPTLE+LG
Sbjct: 209 GVPTLEELG 217


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,858
Number of Sequences: 438
Number of extensions: 5322
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)