Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_M21
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex |...    27   3.1  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    26   5.4  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    26   7.1  

>SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 160 KLESQLTLKKN-CFIITGHSGRVRKLFPVSCSLFEKRPLVAVMAIESQFKKK 8
           K +S  T++ N C  +   +GRV+K+ P       +R ++A+   +   KKK
Sbjct: 79  KNQSTATVEANYCLAVADKTGRVKKIVPAKYLNTFERNILALQEKDKFLKKK 130


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 188 NPTLQIFPFVKFRASNLWQGDLWHKVFL 271
           NP L+ F F K  AS L Q D +H++ L
Sbjct: 526 NPRLEKFSFEKLLASVLNQFDRYHRLLL 553


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -2

Query: 350 YSIALIYNFFFCNVWITQN--YTKFKIS*EKLYAIGLLAINSMLGIL 216
           Y ++L + F F   +I  N  YT F    EK   +GLL  +  LG L
Sbjct: 350 YGMSLFHLFLFA-AFIRNNSLYTSFNFITEKPVIVGLLLFSDALGPL 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,812
Number of Sequences: 5004
Number of extensions: 48012
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)