Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP03_T7_M20
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 32 0.51
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 32 0.51
AL023830-1|CAA19472.1| 449|Caenorhabditis elegans Hypothetical ... 31 1.2
U80023-5|AAG24040.1| 315|Caenorhabditis elegans Serpentine rece... 30 2.1
U40028-5|AAA81116.1| 137|Caenorhabditis elegans Hmg protein 11 ... 30 2.1
AF056578-1|AAC78600.1| 137|Caenorhabditis elegans high mobility... 30 2.1
Z48241-7|CAA88287.1| 1026|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z36237-3|CAA85272.1| 1026|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF047651-5|AAC02722.2| 702|Caenorhabditis elegans Germline-enha... 29 3.6
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 28 6.3
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 28 6.3
AF043698-2|AAB97559.3| 700|Caenorhabditis elegans Hypothetical ... 28 6.3
Z48585-4|CAA88480.1| 476|Caenorhabditis elegans Hypothetical pr... 28 8.3
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 31.9 bits (69), Expect = 0.51
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = +3
Query: 222 QAGRYTTMPWGPTPTHVLSRHPQPPTL*PVARQPTVAPP 338
Q GR T P P P LS P PT P +PT+ PP
Sbjct: 65 QVGRPTESPPLPPPPLPLSNPPAKPTPPPPPPKPTIRPP 103
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 31.9 bits (69), Expect = 0.51
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = +3
Query: 222 QAGRYTTMPWGPTPTHVLSRHPQPPTL*PVARQPTVAPP 338
Q GR T P P P LS P PT P +PT+ PP
Sbjct: 287 QVGRPTESPPLPPPPLPLSNPPAKPTPPPPPPKPTIRPP 325
>AL023830-1|CAA19472.1| 449|Caenorhabditis elegans Hypothetical
protein Y26E6A.1 protein.
Length = 449
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -3
Query: 430 PQNNAHNLYSHLLYHRQQAEEPRARDEPEIDGGATVGCLATGQSVG 293
PQ HNL +H HR+ E RA + D GA G + G
Sbjct: 25 PQARNHNLRNHARRHREMFERARANRRLQADRGAQAARERGGPAAG 70
>U80023-5|AAG24040.1| 315|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 31 protein.
Length = 315
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 669 TSRKRRPVTAPQKCHPPISTKSAT 598
T + + P + P KC+PPIST +T
Sbjct: 284 TGKVKNPKSKPTKCNPPISTTRST 307
>U40028-5|AAA81116.1| 137|Caenorhabditis elegans Hmg protein 11
protein.
Length = 137
Score = 29.9 bits (64), Expect = 2.1
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = -1
Query: 729 DLTEGRLVVADLESPGGSSPTSRKR-RPV--TAPQKCHP-PISTKSATKSDRRAKNQRIM 562
++ E V + S GSSP R R RP T K P P A + R +Q
Sbjct: 16 EVQEDSPAVTESSSANGSSPVRRGRGRPPKGTKVPKVKPAPKPYSGAPRGRPRKSDQVAK 75
Query: 561 STKSSNTIARSPA*EPPKRNTDCLKKY 481
S + + +A S A PKR+ K Y
Sbjct: 76 SPVAKSPVASSSADASPKRSRGAPKSY 102
>AF056578-1|AAC78600.1| 137|Caenorhabditis elegans high mobility
group protein I alpha protein.
Length = 137
Score = 29.9 bits (64), Expect = 2.1
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = -1
Query: 729 DLTEGRLVVADLESPGGSSPTSRKR-RPV--TAPQKCHP-PISTKSATKSDRRAKNQRIM 562
++ E V + S GSSP R R RP T K P P A + R +Q
Sbjct: 16 EVQEDSPAVTESSSANGSSPVRRGRGRPPKGTKVPKVKPAPKPYSGAPRGRPRKSDQVAK 75
Query: 561 STKSSNTIARSPA*EPPKRNTDCLKKY 481
S + + +A S A PKR+ K Y
Sbjct: 76 SPVAKSPVASSSADASPKRSRGAPKSY 102
>Z48241-7|CAA88287.1| 1026|Caenorhabditis elegans Hypothetical
protein C48D5.2a protein.
Length = 1026
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/77 (25%), Positives = 31/77 (40%)
Frame = -3
Query: 679 IVXYIAQAETRDCTPEMPPTHIYEECNKIGPQGEKPEDHVDKIIEYHCEITGMRASQAEY 500
+ Y+ QAE D + C KI P+D D++ E H G AE
Sbjct: 151 LASYVVQAEVGDFEEKTHGMSRTCLCYKI-QFATLPDDFSDRVAELHQLHIGQTPDVAEQ 209
Query: 499 RLLKEISKLESFGEELF 449
L +LE +G +++
Sbjct: 210 NFLDHARRLEMYGMDVY 226
>Z36237-3|CAA85272.1| 1026|Caenorhabditis elegans Hypothetical
protein C48D5.2a protein.
Length = 1026
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/77 (25%), Positives = 31/77 (40%)
Frame = -3
Query: 679 IVXYIAQAETRDCTPEMPPTHIYEECNKIGPQGEKPEDHVDKIIEYHCEITGMRASQAEY 500
+ Y+ QAE D + C KI P+D D++ E H G AE
Sbjct: 151 LASYVVQAEVGDFEEKTHGMSRTCLCYKI-QFATLPDDFSDRVAELHQLHIGQTPDVAEQ 209
Query: 499 RLLKEISKLESFGEELF 449
L +LE +G +++
Sbjct: 210 NFLDHARRLEMYGMDVY 226
>AF047651-5|AAC02722.2| 702|Caenorhabditis elegans
Germline-enhanced at-hook proteinprotein 1 protein.
Length = 702
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -1
Query: 684 GGSSPTSRKRRPVTAPQKCHPPISTKSATKSDRRAKNQR-IMSTKSSNTIARSPA*EPPK 508
G P+S RPV P P + K+D K + + +++T +++ +PP
Sbjct: 525 GSDGPSSSAARPVGRPPTTQPVETAVEKKKNDEDEKRHHPLTNFTTASTSSQNLQDQPPP 584
Query: 507 RNT 499
+NT
Sbjct: 585 KNT 587
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 255 PTPTHVLSRHPQPPTL*PVARQPTVAPP 338
P P V P PP L P+A +V PP
Sbjct: 480 PQPAEVSKSPPPPPPLPPIATPSSVPPP 507
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 255 PTPTHVLSRHPQPPTL*PVARQPTVAPP 338
P P V P PP L P+A +V PP
Sbjct: 487 PQPAEVSKSPPPPPPLPPIATPSSVPPP 514
>AF043698-2|AAB97559.3| 700|Caenorhabditis elegans Hypothetical
protein C54G6.2 protein.
Length = 700
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = -1
Query: 756 HQXYLHAKXDLTEGRLVVADLESPGGSSPTSRKRRPVTAPQKCHPPISTKSATKSDRR 583
H + H + + V+ +P ++PT +RR T + HPP +S+ + R
Sbjct: 52 HVQHNHISQNGIQQPKVILPPPNPYNTAPTHYRRRSSTEAHRYHPPRQPRSSAPTHHR 109
>Z48585-4|CAA88480.1| 476|Caenorhabditis elegans Hypothetical
protein ZK673.4 protein.
Length = 476
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = -3
Query: 547 EYHCEITGMRASQAEYRLLKEISKLESFGEELFFCKPVTPQNNAHNLYSHLLYHRQQAEE 368
EY + S K + K + +ELF Q+ H + H+L +++ E
Sbjct: 288 EYRAHLKRWMTSHQPKVSKKRVQKT-TIADELFQLANFANQSIPHEFFQHMLQDQEEHEA 346
Query: 367 PRAR-DEPEID 338
R + +EPE +
Sbjct: 347 KRVKLEEPEFE 357
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,415,874
Number of Sequences: 27780
Number of extensions: 381026
Number of successful extensions: 1425
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1424
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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