Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_M20
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.1  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   3.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   3.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   3.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.4  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 408 RLWALFCGVTGLQKNNSSPNDSSFDISLSNL 500
           RLW L  G+    +   SP   +FD++ S L
Sbjct: 139 RLWVLDSGLVNNTQPMCSPKLFAFDLNTSQL 169


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 408 RLWALFCGVTGLQKNNSSPNDSSFDISLSNL 500
           RLW L  G+    +   SP   +FD+  S L
Sbjct: 140 RLWVLDSGLVNNNQPMCSPKLLTFDLKTSKL 170


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 408 RLWALFCGVTGLQKNNSSPNDSSFDISLSNL 500
           RLW L  G+    +   SP   +FD++ S L
Sbjct: 134 RLWVLDSGLVNNTQPMCSPKLLTFDLTTSQL 164


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 408 RLWALFCGVTGLQKNNSSPNDSSFDISLSNL 500
           RLW L  G+    +   SP   +FD++ S L
Sbjct: 134 RLWVLDSGLVNNTQPMCSPKLLTFDLTTSQL 164


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 408 RLWALFCGVTGLQKNNSSPNDSSFDISLSNL 500
           RLW L  G+    +   SP   +FD++ S L
Sbjct: 134 RLWVLDSGLVNNTQPMCSPKLLTFDLTTSQL 164


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 637 PEMPPTHIYEECNKIGPQGE 578
           P +PP  ++ EC  +   GE
Sbjct: 439 PPLPPLPLHTECEDLSVSGE 458


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 637 PEMPPTHIYEECNKIGPQGE 578
           P +PP  ++ EC  +   GE
Sbjct: 439 PPLPPLPLHTECEDLSVSGE 458


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -1

Query: 702 ADLESPGGSSPTSRKRRPVTAPQKCHPPISTKSATKSDRRAKNQRIMSTKSSNTIAR 532
           +D E    S+    K  P +A +KC  PI+   A+ S   A+N    S   +++ +R
Sbjct: 567 SDEEIINSSNDEGGKTSPNSAVRKCMSPINGSGASGSG-SAENLSSGSNNQTSSASR 622


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 408 RLWALFCGVTGLQKNNSSPNDSSFDISLSNL 500
           RLW L  G+    +   SP   +FD++ S L
Sbjct: 138 RLWVLDSGLINNIQLMCSPKLLAFDLNTSKL 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,814
Number of Sequences: 438
Number of extensions: 4874
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)