Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP03_T7_M19
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    43   4e-05
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    27   3.9  

>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 31/86 (36%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
 Frame = -2

Query: 694 FSGTGVNLXRSGEQ--HXXYIWGSXRXFSRSCTEXGGAP-ADVVXHPIRPXXXXXXXXXX 524
           FS TG  +  +  Q  H  Y+W           E       DV  HP+ P          
Sbjct: 262 FSQTGEFVFATTYQMAHAIYVWERGMGSLVKILEGPKEELVDVDWHPVFPCVASVGLDSG 321

Query: 523 XI--WAQNQVENWSAFAPDFKELDEN 452
            I  WA  Q E+WSAFAPDF+EL+EN
Sbjct: 322 SIYIWAVEQKESWSAFAPDFQELEEN 347


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 224 TQETITPAETPEKLEPAAKRPK 159
           T+E ITP +T  K EP+AK+ K
Sbjct: 197 TEEIITPMDTTCKPEPSAKKIK 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,509
Number of Sequences: 5004
Number of extensions: 30054
Number of successful extensions: 79
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)